Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1814

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1813 and GFF1814 are separated by 3 nucleotidesGFF1814 and GFF1815 are separated by 5 nucleotidesGFF1815 and GFF1816 are separated by 86 nucleotides GFF1813 - Magnesium and cobalt transport protein CorA, at 680,787 to 681,896 GFF1813 GFF1814 - Glutathione S-transferase (EC 2.5.1.18), at 681,900 to 682,550 GFF1814 GFF1815 - amidohydrolase 2, at 682,556 to 683,449 GFF1815 GFF1816 - Dienelactone hydrolase family, at 683,536 to 684,219 GFF1816 Position (kb) 681 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 681.000 kb on + strand, within GFF1813at 681.001 kb on - strand, within GFF1813at 681.001 kb on - strand, within GFF1813at 681.006 kb on + strand, within GFF1813at 681.006 kb on + strand, within GFF1813at 681.006 kb on + strand, within GFF1813at 681.006 kb on + strand, within GFF1813at 681.006 kb on + strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.007 kb on - strand, within GFF1813at 681.018 kb on + strand, within GFF1813at 681.219 kb on + strand, within GFF1813at 681.220 kb on - strand, within GFF1813at 681.334 kb on - strand, within GFF1813at 681.873 kb on + strandat 681.874 kb on - strandat 681.874 kb on - strandat 681.901 kb on + strandat 681.901 kb on + strandat 681.901 kb on + strandat 681.901 kb on + strandat 681.902 kb on - strandat 681.902 kb on - strandat 681.902 kb on - strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.908 kb on - strandat 681.908 kb on - strandat 681.908 kb on - strandat 681.976 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.219 kb on + strand, within GFF1814at 682.219 kb on + strand, within GFF1814at 682.219 kb on + strand, within GFF1814at 682.219 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.271 kb on - strand, within GFF1814at 682.271 kb on - strand, within GFF1814at 682.363 kb on + strand, within GFF1814at 682.363 kb on + strand, within GFF1814at 682.364 kb on - strand, within GFF1814at 682.423 kb on + strand, within GFF1814at 682.474 kb on + strand, within GFF1814at 682.474 kb on + strand, within GFF1814at 682.475 kb on - strand, within GFF1814at 682.674 kb on + strand, within GFF1815at 682.674 kb on + strand, within GFF1815at 682.674 kb on + strand, within GFF1815at 682.675 kb on - strand, within GFF1815at 682.675 kb on - strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.732 kb on - strand, within GFF1815at 683.037 kb on + strand, within GFF1815at 683.037 kb on + strand, within GFF1815at 683.038 kb on - strand, within GFF1815at 683.038 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.160 kb on + strand, within GFF1815at 683.161 kb on - strand, within GFF1815at 683.161 kb on - strand, within GFF1815at 683.361 kb on + strandat 683.361 kb on + strandat 683.362 kb on - strandat 683.362 kb on - strandat 683.394 kb on + strandat 683.394 kb on + strandat 683.394 kb on + strandat 683.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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681,000 + GFF1813 0.19 -1.6
681,001 - GFF1813 0.19 -0.1
681,001 - GFF1813 0.19 -0.2
681,006 + GFF1813 0.20 +1.3
681,006 + GFF1813 0.20 -0.8
681,006 + GFF1813 0.20 +0.1
681,006 + GFF1813 0.20 +0.1
681,006 + GFF1813 0.20 +1.7
681,007 - GFF1813 0.20 -0.1
681,007 - GFF1813 0.20 +0.3
681,007 - GFF1813 0.20 +1.0
681,007 - GFF1813 0.20 -0.1
681,007 - GFF1813 0.20 +0.7
681,007 - GFF1813 0.20 -0.8
681,007 - GFF1813 0.20 +1.1
681,018 + GFF1813 0.21 +0.1
681,219 + GFF1813 0.39 +0.0
681,220 - GFF1813 0.39 +0.1
681,334 - GFF1813 0.49 -0.2
681,873 + +0.4
681,874 - -0.2
681,874 - -0.1
681,901 + -0.0
681,901 + -0.2
681,901 + -0.2
681,901 + +0.3
681,902 - +0.9
681,902 - -1.6
681,902 - +0.0
681,907 + -0.3
681,907 + +0.1
681,907 + +0.1
681,907 + -0.3
681,907 + +0.7
681,908 - +0.8
681,908 - +0.3
681,908 - -0.0
681,976 + GFF1814 0.12 +0.5
682,051 + GFF1814 0.23 +0.0
682,051 + GFF1814 0.23 -0.6
682,051 + GFF1814 0.23 -0.2
682,051 + GFF1814 0.23 -0.3
682,051 + GFF1814 0.23 -0.3
682,051 + GFF1814 0.23 -0.1
682,051 + GFF1814 0.23 -0.1
682,052 - GFF1814 0.23 +0.3
682,052 - GFF1814 0.23 -0.4
682,052 - GFF1814 0.23 -0.0
682,052 - GFF1814 0.23 +0.6
682,052 - GFF1814 0.23 +0.2
682,052 - GFF1814 0.23 +0.9
682,052 - GFF1814 0.23 +0.2
682,052 - GFF1814 0.23 -0.1
682,052 - GFF1814 0.23 +0.2
682,219 + GFF1814 0.49 +0.2
682,219 + GFF1814 0.49 +0.7
682,219 + GFF1814 0.49 +0.4
682,219 - GFF1814 0.49 +0.0
682,220 - GFF1814 0.49 +0.2
682,220 - GFF1814 0.49 -0.2
682,220 - GFF1814 0.49 -1.3
682,220 - GFF1814 0.49 -0.1
682,220 - GFF1814 0.49 +0.3
682,270 + GFF1814 0.57 +1.1
682,270 + GFF1814 0.57 +0.5
682,270 + GFF1814 0.57 +0.2
682,270 + GFF1814 0.57 -1.1
682,271 - GFF1814 0.57 -0.7
682,271 - GFF1814 0.57 +0.8
682,363 + GFF1814 0.71 -1.6
682,363 + GFF1814 0.71 +0.7
682,364 - GFF1814 0.71 -1.0
682,423 + GFF1814 0.80 -1.0
682,474 + GFF1814 0.88 +0.1
682,474 + GFF1814 0.88 +1.2
682,475 - GFF1814 0.88 +0.0
682,674 + GFF1815 0.13 +0.9
682,674 + GFF1815 0.13 +2.0
682,674 + GFF1815 0.13 -1.1
682,675 - GFF1815 0.13 -0.3
682,675 - GFF1815 0.13 -0.7
682,731 + GFF1815 0.20 -0.1
682,731 + GFF1815 0.20 +0.7
682,731 + GFF1815 0.20 +0.1
682,732 - GFF1815 0.20 -0.2
683,037 + GFF1815 0.54 -0.7
683,037 + GFF1815 0.54 -1.2
683,038 - GFF1815 0.54 -0.3
683,038 - GFF1815 0.54 -0.1
683,143 - GFF1815 0.66 -0.6
683,143 - GFF1815 0.66 +0.4
683,143 - GFF1815 0.66 -0.2
683,143 - GFF1815 0.66 +0.4
683,143 - GFF1815 0.66 -0.4
683,143 - GFF1815 0.66 -0.3
683,143 - GFF1815 0.66 -0.9
683,143 - GFF1815 0.66 -2.5
683,160 + GFF1815 0.68 -0.1
683,161 - GFF1815 0.68 -0.0
683,161 - GFF1815 0.68 +0.4
683,361 + -0.8
683,361 + -0.6
683,362 - -0.3
683,362 - +0.3
683,394 + -0.1
683,394 + +0.1
683,394 + +0.2
683,395 - +0.2

Or see this region's nucleotide sequence