Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1463 and GFF1464 are separated by 100 nucleotides GFF1464 and GFF1465 are separated by 8 nucleotides GFF1465 and GFF1466 are separated by 312 nucleotides
GFF1463 - Flagellar biosynthesis protein FliR, at 315,286 to 316,053
GFF1463
GFF1464 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 316,154 to 316,390
GFF1464
GFF1465 - RNA polymerase sigma factor RpoE, at 316,399 to 316,803
GFF1465
GFF1466 - Ribosomal-protein-S5p-alanine acetyltransferase, at 317,116 to 317,619
GFF1466
Position (kb) 316
317 Strain fitness (log2 ratio) -2
-1
0
1 at 316.086 kb on + strand at 316.487 kb on + strand, within GFF1465 at 316.488 kb on - strand, within GFF1465 at 316.488 kb on - strand, within GFF1465 at 316.508 kb on + strand, within GFF1465 at 316.509 kb on - strand, within GFF1465 at 316.775 kb on + strand at 316.775 kb on + strand at 316.775 kb on + strand at 316.776 kb on - strand at 316.776 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.948 kb on + strand at 316.949 kb on - strand at 316.949 kb on - strand at 316.949 kb on - strand at 316.971 kb on + strand at 316.971 kb on + strand at 316.971 kb on + strand at 316.971 kb on + strand at 316.972 kb on - strand at 316.972 kb on - strand at 316.972 kb on - strand at 316.972 kb on - strand at 316.972 kb on - strand at 317.017 kb on + strand at 317.017 kb on + strand at 317.017 kb on + strand at 317.018 kb on - strand at 317.018 kb on - strand at 317.150 kb on + strand at 317.150 kb on + strand at 317.150 kb on + strand at 317.150 kb on + strand at 317.151 kb on - strand at 317.151 kb on - strand at 317.373 kb on - strand, within GFF1466 at 317.671 kb on + strand at 317.671 kb on + strand at 317.671 kb on + strand at 317.671 kb on + strand at 317.672 kb on - strand at 317.672 kb on - strand at 317.672 kb on - strand at 317.782 kb on + strand at 317.782 kb on + strand at 317.782 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 316,086 + -1.4 316,487 + GFF1465 0.22 +0.1 316,488 - GFF1465 0.22 -0.3 316,488 - GFF1465 0.22 -0.2 316,508 + GFF1465 0.27 +0.6 316,509 - GFF1465 0.27 +0.4 316,775 + -0.1 316,775 + +0.1 316,775 + -0.1 316,776 - +0.4 316,776 - -0.2 316,910 - +0.1 316,910 - -0.0 316,948 + -1.2 316,949 - -2.0 316,949 - -0.4 316,949 - -0.1 316,971 + -0.8 316,971 + +0.3 316,971 + +0.5 316,971 + +0.3 316,972 - -0.3 316,972 - +0.3 316,972 - -0.0 316,972 - -0.6 316,972 - +0.6 317,017 + +0.4 317,017 + -0.0 317,017 + -0.1 317,018 - -0.1 317,018 - -0.2 317,150 + +0.4 317,150 + -0.1 317,150 + +1.7 317,150 + -1.2 317,151 - +0.1 317,151 - +0.0 317,373 - GFF1466 0.51 -0.4 317,671 + -0.1 317,671 + -0.1 317,671 + -0.0 317,671 + +0.1 317,672 - +1.0 317,672 - -0.3 317,672 - -0.4 317,782 + -1.3 317,782 + +1.1 317,782 + -0.6
Or see this region's nucleotide sequence