Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1427

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1425 and GFF1426 are separated by 80 nucleotidesGFF1426 and GFF1427 are separated by 57 nucleotidesGFF1427 and GFF1428 are separated by 155 nucleotidesGFF1428 and GFF1429 are separated by 2 nucleotides GFF1425 - hypothetical protein, at 280,834 to 281,205 GFF1425 GFF1426 - hypothetical protein, at 281,286 to 281,867 GFF1426 GFF1427 - hypothetical protein, at 281,925 to 282,458 GFF1427 GFF1428 - RNA polymerase sigma factor for flagellar operon, at 282,614 to 283,330 GFF1428 GFF1429 - hypothetical protein, at 283,333 to 284,133 GFF1429 Position (kb) 281 282 283Strain fitness (log2 ratio) -1 0 1at 280.997 kb on + strand, within GFF1425at 281.108 kb on + strand, within GFF1425at 281.108 kb on + strand, within GFF1425at 281.108 kb on + strand, within GFF1425at 281.108 kb on + strand, within GFF1425at 281.109 kb on - strand, within GFF1425at 281.109 kb on - strand, within GFF1425at 281.109 kb on - strand, within GFF1425at 281.109 kb on - strand, within GFF1425at 281.445 kb on + strand, within GFF1426at 281.739 kb on + strand, within GFF1426at 281.739 kb on + strand, within GFF1426at 281.739 kb on + strand, within GFF1426at 281.739 kb on + strand, within GFF1426at 281.740 kb on - strand, within GFF1426at 281.740 kb on - strand, within GFF1426at 281.763 kb on + strand, within GFF1426at 281.763 kb on + strand, within GFF1426at 281.764 kb on - strand, within GFF1426at 281.983 kb on + strand, within GFF1427at 281.983 kb on + strand, within GFF1427at 281.983 kb on + strand, within GFF1427at 281.983 kb on + strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.984 kb on - strand, within GFF1427at 281.986 kb on + strand, within GFF1427at 281.986 kb on + strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 281.987 kb on - strand, within GFF1427at 282.010 kb on + strand, within GFF1427at 282.010 kb on + strand, within GFF1427at 282.010 kb on + strand, within GFF1427at 282.010 kb on + strand, within GFF1427at 282.011 kb on - strand, within GFF1427at 282.011 kb on - strand, within GFF1427at 282.028 kb on + strand, within GFF1427at 282.028 kb on + strand, within GFF1427at 282.028 kb on + strand, within GFF1427at 282.028 kb on + strand, within GFF1427at 282.028 kb on + strand, within GFF1427at 282.049 kb on + strand, within GFF1427at 282.118 kb on + strand, within GFF1427at 282.119 kb on - strand, within GFF1427at 282.299 kb on - strand, within GFF1427at 282.379 kb on + strand, within GFF1427at 282.379 kb on + strand, within GFF1427at 282.380 kb on - strand, within GFF1427at 282.380 kb on - strand, within GFF1427at 282.394 kb on + strand, within GFF1427at 282.394 kb on + strand, within GFF1427at 282.394 kb on + strand, within GFF1427at 282.394 kb on + strand, within GFF1427at 282.394 kb on + strand, within GFF1427at 282.395 kb on - strand, within GFF1427at 282.395 kb on - strand, within GFF1427at 282.395 kb on - strand, within GFF1427at 282.395 kb on - strand, within GFF1427at 282.395 kb on - strand, within GFF1427at 282.504 kb on - strandat 282.517 kb on - strandat 282.525 kb on - strandat 282.554 kb on + strandat 282.555 kb on - strandat 282.555 kb on - strandat 282.573 kb on + strandat 282.732 kb on + strand, within GFF1428at 282.732 kb on + strand, within GFF1428at 282.732 kb on + strand, within GFF1428at 282.733 kb on - strand, within GFF1428at 282.735 kb on + strand, within GFF1428at 282.735 kb on + strand, within GFF1428at 282.735 kb on + strand, within GFF1428at 282.735 kb on + strand, within GFF1428at 282.735 kb on + strand, within GFF1428at 282.735 kb on + strand, within GFF1428at 282.736 kb on - strand, within GFF1428at 283.326 kb on + strandat 283.326 kb on + strandat 283.326 kb on + strandat 283.326 kb on + strandat 283.327 kb on - strandat 283.327 kb on - strandat 283.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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280,997 + GFF1425 0.44 -0.3
281,108 + GFF1425 0.74 -0.2
281,108 + GFF1425 0.74 +0.3
281,108 + GFF1425 0.74 +0.4
281,108 + GFF1425 0.74 -1.6
281,109 - GFF1425 0.74 -0.4
281,109 - GFF1425 0.74 -0.1
281,109 - GFF1425 0.74 -0.3
281,109 - GFF1425 0.74 -0.2
281,445 + GFF1426 0.27 -1.1
281,739 + GFF1426 0.78 +0.0
281,739 + GFF1426 0.78 +0.5
281,739 + GFF1426 0.78 -1.6
281,739 + GFF1426 0.78 +0.4
281,740 - GFF1426 0.78 -0.3
281,740 - GFF1426 0.78 -0.0
281,763 + GFF1426 0.82 +0.2
281,763 + GFF1426 0.82 -0.0
281,764 - GFF1426 0.82 +0.8
281,983 + GFF1427 0.11 +1.2
281,983 + GFF1427 0.11 -1.1
281,983 + GFF1427 0.11 -1.1
281,983 + GFF1427 0.11 +0.4
281,984 - GFF1427 0.11 +0.3
281,984 - GFF1427 0.11 -0.1
281,984 - GFF1427 0.11 -0.3
281,984 - GFF1427 0.11 +0.8
281,984 - GFF1427 0.11 -0.5
281,984 - GFF1427 0.11 -0.7
281,986 + GFF1427 0.11 -0.9
281,986 + GFF1427 0.11 +0.1
281,987 - GFF1427 0.12 -0.3
281,987 - GFF1427 0.12 -0.1
281,987 - GFF1427 0.12 -0.1
281,987 - GFF1427 0.12 +0.4
281,987 - GFF1427 0.12 -0.2
281,987 - GFF1427 0.12 +0.2
282,010 + GFF1427 0.16 -0.2
282,010 + GFF1427 0.16 -0.7
282,010 + GFF1427 0.16 -0.3
282,010 + GFF1427 0.16 -0.6
282,011 - GFF1427 0.16 -0.9
282,011 - GFF1427 0.16 -1.5
282,028 + GFF1427 0.19 -0.5
282,028 + GFF1427 0.19 +1.0
282,028 + GFF1427 0.19 -0.4
282,028 + GFF1427 0.19 +0.1
282,028 + GFF1427 0.19 +0.8
282,049 + GFF1427 0.23 +0.5
282,118 + GFF1427 0.36 +0.1
282,119 - GFF1427 0.36 +0.2
282,299 - GFF1427 0.70 +0.3
282,379 + GFF1427 0.85 +0.1
282,379 + GFF1427 0.85 -0.1
282,380 - GFF1427 0.85 -0.9
282,380 - GFF1427 0.85 -0.4
282,394 + GFF1427 0.88 +0.3
282,394 + GFF1427 0.88 +0.3
282,394 + GFF1427 0.88 +0.1
282,394 + GFF1427 0.88 -0.8
282,394 + GFF1427 0.88 +0.3
282,395 - GFF1427 0.88 -0.4
282,395 - GFF1427 0.88 -0.1
282,395 - GFF1427 0.88 +0.3
282,395 - GFF1427 0.88 -0.3
282,395 - GFF1427 0.88 -1.0
282,504 - +0.1
282,517 - +0.0
282,525 - -0.4
282,554 + +0.1
282,555 - +0.3
282,555 - -0.3
282,573 + +0.1
282,732 + GFF1428 0.16 +1.1
282,732 + GFF1428 0.16 -0.5
282,732 + GFF1428 0.16 +0.0
282,733 - GFF1428 0.17 -0.2
282,735 + GFF1428 0.17 +0.4
282,735 + GFF1428 0.17 -0.1
282,735 + GFF1428 0.17 +0.7
282,735 + GFF1428 0.17 +0.5
282,735 + GFF1428 0.17 +0.3
282,735 + GFF1428 0.17 -0.6
282,736 - GFF1428 0.17 -0.7
283,326 + -1.6
283,326 + +0.5
283,326 + +0.3
283,326 + +0.3
283,327 - -0.6
283,327 - -0.1
283,327 - +0.5

Or see this region's nucleotide sequence