Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1257

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1255 and GFF1256 are separated by 16 nucleotidesGFF1256 and GFF1257 are separated by 23 nucleotidesGFF1257 and GFF1258 are separated by 39 nucleotidesGFF1258 and GFF1259 overlap by 25 nucleotides GFF1255 - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-), at 112,778 to 113,509 GFF1255 GFF1256 - FIG028220: hypothetical protein co-occurring with HEAT repeat protein, at 113,526 to 113,939 GFF1256 GFF1257 - FAD/FMN-containing dehydrogenases, at 113,963 to 117,841 GFF1257 GFF1258 - hypothetical protein, at 117,881 to 118,051 GFF1258 GFF1259 - Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3), at 118,027 to 119,346 GFF1259 Position (kb) 113 114 115 116 117 118Strain fitness (log2 ratio) -3 -2 -1 0 1at 113.608 kb on + strand, within GFF1256at 113.609 kb on - strand, within GFF1256at 113.609 kb on - strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.710 kb on + strand, within GFF1256at 113.710 kb on + strand, within GFF1256at 113.710 kb on + strand, within GFF1256at 113.711 kb on - strand, within GFF1256at 113.711 kb on - strand, within GFF1256at 113.711 kb on - strand, within GFF1256at 113.812 kb on + strand, within GFF1256at 113.812 kb on + strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 113.813 kb on - strand, within GFF1256at 114.378 kb on + strand, within GFF1257at 114.540 kb on + strand, within GFF1257at 114.808 kb on - strand, within GFF1257at 116.167 kb on - strand, within GFF1257at 117.648 kb on + strandat 117.763 kb on - strandat 117.763 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.885 kb on + strandat 117.900 kb on + strand, within GFF1258at 117.900 kb on + strand, within GFF1258at 117.900 kb on + strand, within GFF1258at 117.900 kb on + strand, within GFF1258at 117.900 kb on + strand, within GFF1258at 117.900 kb on + strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.901 kb on - strand, within GFF1258at 117.968 kb on + strand, within GFF1258at 117.968 kb on + strand, within GFF1258at 117.968 kb on + strand, within GFF1258at 117.969 kb on - strand, within GFF1258at 117.969 kb on - strand, within GFF1258at 117.979 kb on + strand, within GFF1258at 117.980 kb on - strand, within GFF1258at 117.984 kb on + strand, within GFF1258at 117.984 kb on + strand, within GFF1258at 117.985 kb on - strand, within GFF1258at 118.177 kb on + strand, within GFF1259at 118.177 kb on + strand, within GFF1259at 118.178 kb on - strand, within GFF1259at 118.178 kb on - strand, within GFF1259at 118.198 kb on + strand, within GFF1259at 118.199 kb on - strand, within GFF1259at 118.199 kb on - strand, within GFF1259at 118.199 kb on - strand, within GFF1259at 118.216 kb on + strand, within GFF1259at 118.216 kb on + strand, within GFF1259at 118.216 kb on + strand, within GFF1259at 118.217 kb on - strand, within GFF1259at 118.217 kb on - strand, within GFF1259at 118.228 kb on + strand, within GFF1259at 118.229 kb on - strand, within GFF1259at 118.229 kb on - strand, within GFF1259at 118.229 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.397 kb on - strand, within GFF1259at 118.420 kb on + strand, within GFF1259at 118.420 kb on + strand, within GFF1259at 118.420 kb on + strand, within GFF1259at 118.420 kb on + strand, within GFF1259at 118.420 kb on + strand, within GFF1259at 118.421 kb on - strand, within GFF1259at 118.421 kb on - strand, within GFF1259at 118.421 kb on - strand, within GFF1259at 118.451 kb on - strand, within GFF1259at 118.451 kb on - strand, within GFF1259at 118.480 kb on + strand, within GFF1259at 118.480 kb on + strand, within GFF1259at 118.480 kb on + strand, within GFF1259at 118.481 kb on - strand, within GFF1259at 118.483 kb on + strand, within GFF1259at 118.483 kb on + strand, within GFF1259at 118.777 kb on + strand, within GFF1259at 118.777 kb on + strand, within GFF1259at 118.778 kb on - strand, within GFF1259at 118.778 kb on - strand, within GFF1259at 118.778 kb on - strand, within GFF1259

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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113,608 + GFF1256 0.20 -0.1
113,609 - GFF1256 0.20 +0.7
113,609 - GFF1256 0.20 -0.0
113,647 + GFF1256 0.29 +0.3
113,647 + GFF1256 0.29 +0.4
113,647 + GFF1256 0.29 +0.7
113,647 + GFF1256 0.29 -1.2
113,647 + GFF1256 0.29 +0.3
113,647 + GFF1256 0.29 +0.2
113,647 + GFF1256 0.29 +1.1
113,647 + GFF1256 0.29 -0.4
113,647 + GFF1256 0.29 -0.0
113,647 + GFF1256 0.29 +0.1
113,647 + GFF1256 0.29 +1.5
113,648 - GFF1256 0.29 -0.8
113,648 - GFF1256 0.29 +0.3
113,648 - GFF1256 0.29 -0.2
113,648 - GFF1256 0.29 -0.2
113,648 - GFF1256 0.29 +0.7
113,648 - GFF1256 0.29 +0.7
113,648 - GFF1256 0.29 +0.5
113,653 + GFF1256 0.31 +0.4
113,653 + GFF1256 0.31 -0.0
113,653 + GFF1256 0.31 -0.1
113,653 + GFF1256 0.31 +0.3
113,653 + GFF1256 0.31 -0.2
113,653 + GFF1256 0.31 -0.9
113,653 + GFF1256 0.31 -0.8
113,654 - GFF1256 0.31 -0.2
113,654 - GFF1256 0.31 +0.3
113,654 - GFF1256 0.31 -0.4
113,654 - GFF1256 0.31 +0.3
113,654 - GFF1256 0.31 +0.0
113,710 + GFF1256 0.44 +0.3
113,710 + GFF1256 0.44 +0.2
113,710 + GFF1256 0.44 -0.2
113,711 - GFF1256 0.45 -0.1
113,711 - GFF1256 0.45 -0.6
113,711 - GFF1256 0.45 -1.0
113,812 + GFF1256 0.69 +0.1
113,812 + GFF1256 0.69 +1.1
113,813 - GFF1256 0.69 +0.1
113,813 - GFF1256 0.69 -1.0
113,813 - GFF1256 0.69 +0.2
113,813 - GFF1256 0.69 -0.3
113,813 - GFF1256 0.69 +0.2
113,813 - GFF1256 0.69 +0.8
114,378 + GFF1257 0.11 -1.3
114,540 + GFF1257 0.15 -0.8
114,808 - GFF1257 0.22 -2.0
116,167 - GFF1257 0.57 -3.1
117,648 + -1.7
117,763 - -2.3
117,763 - -1.5
117,869 - -0.7
117,869 - -0.5
117,869 - +0.7
117,869 - -0.3
117,885 + -1.6
117,900 + GFF1258 0.11 -0.1
117,900 + GFF1258 0.11 +0.8
117,900 + GFF1258 0.11 +0.6
117,900 + GFF1258 0.11 -0.5
117,900 + GFF1258 0.11 -0.5
117,900 + GFF1258 0.11 +0.0
117,901 - GFF1258 0.12 +0.4
117,901 - GFF1258 0.12 -0.0
117,901 - GFF1258 0.12 +0.0
117,901 - GFF1258 0.12 -0.4
117,901 - GFF1258 0.12 +0.3
117,901 - GFF1258 0.12 -0.5
117,901 - GFF1258 0.12 +0.5
117,901 - GFF1258 0.12 -0.0
117,901 - GFF1258 0.12 +0.0
117,901 - GFF1258 0.12 -0.4
117,968 + GFF1258 0.51 -1.3
117,968 + GFF1258 0.51 -0.4
117,968 + GFF1258 0.51 -0.4
117,969 - GFF1258 0.51 -0.4
117,969 - GFF1258 0.51 -0.8
117,979 + GFF1258 0.57 -0.1
117,980 - GFF1258 0.58 -0.3
117,984 + GFF1258 0.60 +0.4
117,984 + GFF1258 0.60 +0.8
117,985 - GFF1258 0.61 +0.5
118,177 + GFF1259 0.11 -0.7
118,177 + GFF1259 0.11 -0.0
118,178 - GFF1259 0.11 -0.9
118,178 - GFF1259 0.11 +0.2
118,198 + GFF1259 0.13 +0.2
118,199 - GFF1259 0.13 +0.5
118,199 - GFF1259 0.13 +0.8
118,199 - GFF1259 0.13 -0.7
118,216 + GFF1259 0.14 -1.8
118,216 + GFF1259 0.14 +1.2
118,216 + GFF1259 0.14 -0.3
118,217 - GFF1259 0.14 +0.5
118,217 - GFF1259 0.14 +0.5
118,228 + GFF1259 0.15 -0.3
118,229 - GFF1259 0.15 -0.2
118,229 - GFF1259 0.15 +0.0
118,229 - GFF1259 0.15 -1.3
118,397 - GFF1259 0.28 -0.7
118,397 - GFF1259 0.28 +0.1
118,397 - GFF1259 0.28 +0.1
118,397 - GFF1259 0.28 +0.2
118,397 - GFF1259 0.28 -0.1
118,397 - GFF1259 0.28 -0.2
118,397 - GFF1259 0.28 -0.2
118,420 + GFF1259 0.30 -0.5
118,420 + GFF1259 0.30 +0.2
118,420 + GFF1259 0.30 +0.6
118,420 + GFF1259 0.30 -0.3
118,420 + GFF1259 0.30 -0.1
118,421 - GFF1259 0.30 -1.3
118,421 - GFF1259 0.30 +0.1
118,421 - GFF1259 0.30 -0.1
118,451 - GFF1259 0.32 +0.3
118,451 - GFF1259 0.32 +0.1
118,480 + GFF1259 0.34 -0.3
118,480 + GFF1259 0.34 +0.2
118,480 + GFF1259 0.34 -1.8
118,481 - GFF1259 0.34 +0.2
118,483 + GFF1259 0.35 -0.2
118,483 + GFF1259 0.35 +0.3
118,777 + GFF1259 0.57 +0.3
118,777 + GFF1259 0.57 -0.3
118,778 - GFF1259 0.57 -0.2
118,778 - GFF1259 0.57 +0.2
118,778 - GFF1259 0.57 -2.0

Or see this region's nucleotide sequence