Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1166

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1165 and GFF1166 are separated by 20 nucleotidesGFF1166 and GFF1167 are separated by 117 nucleotides GFF1165 - 6-aminohexanoate-dimer hydrolase (EC 3.5.1.46), at 23,258 to 24,565 GFF1165 GFF1166 - Dihydrofolate reductase (EC 1.5.1.3), at 24,586 to 25,116 GFF1166 GFF1167 - Seryl-tRNA synthetase (EC 6.1.1.11), at 25,234 to 26,553 GFF1167 Position (kb) 24 25 26Strain fitness (log2 ratio) -1 0 1at 23.615 kb on + strand, within GFF1165at 23.615 kb on + strand, within GFF1165at 23.616 kb on - strand, within GFF1165at 23.667 kb on - strand, within GFF1165at 23.667 kb on - strand, within GFF1165at 23.792 kb on + strand, within GFF1165at 23.793 kb on - strand, within GFF1165at 23.793 kb on - strand, within GFF1165at 23.870 kb on + strand, within GFF1165at 23.870 kb on + strand, within GFF1165at 23.870 kb on + strand, within GFF1165at 23.871 kb on - strand, within GFF1165at 23.871 kb on - strand, within GFF1165at 23.871 kb on - strand, within GFF1165at 23.871 kb on - strand, within GFF1165at 23.883 kb on - strand, within GFF1165at 23.883 kb on - strand, within GFF1165at 23.951 kb on + strand, within GFF1165at 23.951 kb on + strand, within GFF1165at 23.951 kb on + strand, within GFF1165at 23.952 kb on - strand, within GFF1165at 23.952 kb on - strand, within GFF1165at 23.969 kb on + strand, within GFF1165at 23.970 kb on - strand, within GFF1165at 23.970 kb on - strand, within GFF1165at 23.970 kb on - strand, within GFF1165at 23.972 kb on + strand, within GFF1165at 23.972 kb on + strand, within GFF1165at 23.972 kb on + strand, within GFF1165at 23.972 kb on + strand, within GFF1165at 23.973 kb on - strand, within GFF1165at 23.973 kb on - strand, within GFF1165at 23.973 kb on - strand, within GFF1165at 24.027 kb on - strand, within GFF1165at 24.027 kb on - strand, within GFF1165at 24.332 kb on + strand, within GFF1165at 24.356 kb on + strand, within GFF1165at 24.356 kb on + strand, within GFF1165at 24.356 kb on + strand, within GFF1165at 24.356 kb on + strand, within GFF1165at 24.431 kb on + strand, within GFF1165at 24.431 kb on + strand, within GFF1165at 24.431 kb on + strand, within GFF1165at 24.431 kb on + strand, within GFF1165at 24.432 kb on - strand, within GFF1165at 24.432 kb on - strand, within GFF1165at 24.432 kb on - strand, within GFF1165at 24.432 kb on - strand, within GFF1165at 24.432 kb on - strand, within GFF1165at 24.468 kb on - strandat 24.494 kb on + strandat 24.599 kb on + strandat 24.599 kb on + strandat 24.599 kb on + strandat 24.599 kb on + strandat 24.600 kb on - strandat 24.600 kb on - strandat 24.674 kb on + strand, within GFF1166at 24.674 kb on + strand, within GFF1166at 24.674 kb on + strand, within GFF1166at 24.710 kb on + strand, within GFF1166at 24.710 kb on + strand, within GFF1166at 24.710 kb on + strand, within GFF1166at 24.711 kb on - strand, within GFF1166at 24.711 kb on - strand, within GFF1166at 24.711 kb on - strand, within GFF1166at 24.711 kb on - strand, within GFF1166at 24.711 kb on - strand, within GFF1166at 24.719 kb on + strand, within GFF1166at 24.871 kb on - strand, within GFF1166at 24.960 kb on - strand, within GFF1166at 24.974 kb on + strand, within GFF1166at 24.974 kb on + strand, within GFF1166at 24.974 kb on + strand, within GFF1166at 24.974 kb on + strand, within GFF1166at 24.974 kb on + strand, within GFF1166at 24.974 kb on + strand, within GFF1166at 24.975 kb on - strand, within GFF1166at 24.975 kb on - strand, within GFF1166at 24.975 kb on - strand, within GFF1166at 24.975 kb on - strand, within GFF1166at 24.989 kb on + strand, within GFF1166at 24.989 kb on + strand, within GFF1166at 24.989 kb on + strand, within GFF1166at 24.989 kb on + strand, within GFF1166at 24.989 kb on + strand, within GFF1166at 24.989 kb on + strand, within GFF1166at 24.990 kb on - strand, within GFF1166at 25.073 kb on + strandat 25.074 kb on - strandat 25.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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23,615 + GFF1165 0.27 +0.2
23,615 + GFF1165 0.27 +0.9
23,616 - GFF1165 0.27 -0.0
23,667 - GFF1165 0.31 -0.8
23,667 - GFF1165 0.31 -1.0
23,792 + GFF1165 0.41 +0.1
23,793 - GFF1165 0.41 +0.3
23,793 - GFF1165 0.41 +0.7
23,870 + GFF1165 0.47 +1.3
23,870 + GFF1165 0.47 +0.9
23,870 + GFF1165 0.47 +0.6
23,871 - GFF1165 0.47 +0.1
23,871 - GFF1165 0.47 +0.8
23,871 - GFF1165 0.47 -0.2
23,871 - GFF1165 0.47 +0.2
23,883 - GFF1165 0.48 +0.0
23,883 - GFF1165 0.48 -1.5
23,951 + GFF1165 0.53 -0.6
23,951 + GFF1165 0.53 -0.3
23,951 + GFF1165 0.53 +0.5
23,952 - GFF1165 0.53 +0.8
23,952 - GFF1165 0.53 +0.3
23,969 + GFF1165 0.54 +0.2
23,970 - GFF1165 0.54 +1.5
23,970 - GFF1165 0.54 +0.4
23,970 - GFF1165 0.54 +0.2
23,972 + GFF1165 0.55 +0.2
23,972 + GFF1165 0.55 +0.7
23,972 + GFF1165 0.55 +0.2
23,972 + GFF1165 0.55 +0.1
23,973 - GFF1165 0.55 +0.2
23,973 - GFF1165 0.55 -1.4
23,973 - GFF1165 0.55 -0.2
24,027 - GFF1165 0.59 +1.7
24,027 - GFF1165 0.59 +0.5
24,332 + GFF1165 0.82 -0.1
24,356 + GFF1165 0.84 +0.0
24,356 + GFF1165 0.84 -0.4
24,356 + GFF1165 0.84 +0.7
24,356 + GFF1165 0.84 -0.2
24,431 + GFF1165 0.90 +1.0
24,431 + GFF1165 0.90 -0.1
24,431 + GFF1165 0.90 -0.5
24,431 + GFF1165 0.90 +0.1
24,432 - GFF1165 0.90 +0.3
24,432 - GFF1165 0.90 -0.6
24,432 - GFF1165 0.90 -0.0
24,432 - GFF1165 0.90 +0.3
24,432 - GFF1165 0.90 -0.4
24,468 - +0.3
24,494 + -0.4
24,599 + -0.4
24,599 + +0.5
24,599 + -0.0
24,599 + +0.8
24,600 - -1.1
24,600 - +0.7
24,674 + GFF1166 0.17 -0.5
24,674 + GFF1166 0.17 +0.8
24,674 + GFF1166 0.17 -0.7
24,710 + GFF1166 0.23 -0.9
24,710 + GFF1166 0.23 -0.5
24,710 + GFF1166 0.23 -1.0
24,711 - GFF1166 0.24 +0.2
24,711 - GFF1166 0.24 -0.7
24,711 - GFF1166 0.24 +1.2
24,711 - GFF1166 0.24 -0.5
24,711 - GFF1166 0.24 -0.0
24,719 + GFF1166 0.25 -0.0
24,871 - GFF1166 0.54 -0.1
24,960 - GFF1166 0.70 +1.0
24,974 + GFF1166 0.73 -0.2
24,974 + GFF1166 0.73 -0.6
24,974 + GFF1166 0.73 -0.0
24,974 + GFF1166 0.73 +0.3
24,974 + GFF1166 0.73 +0.1
24,974 + GFF1166 0.73 +0.1
24,975 - GFF1166 0.73 +0.1
24,975 - GFF1166 0.73 +0.2
24,975 - GFF1166 0.73 -0.6
24,975 - GFF1166 0.73 +1.1
24,989 + GFF1166 0.76 -0.1
24,989 + GFF1166 0.76 +0.0
24,989 + GFF1166 0.76 -0.1
24,989 + GFF1166 0.76 -0.0
24,989 + GFF1166 0.76 -0.5
24,989 + GFF1166 0.76 -0.1
24,990 - GFF1166 0.76 -0.7
25,073 + -0.0
25,074 - +1.4
25,074 - +0.4

Or see this region's nucleotide sequence