Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF998 and GFF999 are separated by 5 nucleotides GFF999 and GFF1000 are separated by 16 nucleotides GFF1000 and GFF1001 are separated by 44 nucleotides GFF1001 and GFF1002 are separated by 59 nucleotides
GFF998 - putative thiolase, at 736,791 to 737,960
GFF998
GFF999 - hypothetical protein, at 737,966 to 738,367
GFF999
GFF1000 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 738,384 to 739,616
GFF1000
GFF1001 - benzoate degradation ring-cleavage hydrolase # FIG-predicted, at 739,661 to 740,488
GFF1001
GFF1002 - MmgE/PrpD family protein, at 740,548 to 741,960
GFF1002
Position (kb) 738
739
740 Strain fitness (log2 ratio) -1
0
1 at 737.423 kb on + strand, within GFF998 at 737.652 kb on + strand, within GFF998 at 737.761 kb on + strand, within GFF998 at 737.762 kb on - strand, within GFF998 at 737.815 kb on - strand, within GFF998 at 737.815 kb on - strand, within GFF998 at 737.964 kb on - strand at 737.969 kb on + strand at 737.969 kb on + strand at 737.969 kb on + strand at 737.970 kb on - strand at 737.970 kb on - strand at 738.156 kb on - strand, within GFF999 at 738.156 kb on - strand, within GFF999 at 738.156 kb on - strand, within GFF999 at 738.161 kb on + strand, within GFF999 at 738.162 kb on - strand, within GFF999 at 738.212 kb on + strand, within GFF999 at 738.366 kb on - strand at 738.525 kb on + strand, within GFF1000 at 738.588 kb on + strand, within GFF1000 at 738.588 kb on + strand, within GFF1000 at 738.589 kb on - strand, within GFF1000 at 738.937 kb on - strand, within GFF1000 at 739.338 kb on + strand, within GFF1000 at 739.338 kb on + strand, within GFF1000 at 739.338 kb on + strand, within GFF1000 at 739.338 kb on + strand, within GFF1000 at 739.339 kb on - strand, within GFF1000 at 739.339 kb on - strand, within GFF1000 at 739.542 kb on - strand at 739.542 kb on - strand at 739.542 kb on - strand at 739.542 kb on - strand at 739.614 kb on + strand at 739.854 kb on - strand, within GFF1001 at 740.043 kb on + strand, within GFF1001 at 740.044 kb on - strand, within GFF1001 at 740.044 kb on - strand, within GFF1001 at 740.301 kb on - strand, within GFF1001 at 740.493 kb on + strand at 740.494 kb on - strand at 740.540 kb on - strand at 740.549 kb on + strand at 740.549 kb on + strand at 740.550 kb on - strand at 740.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 737,423 + GFF998 0.54 +0.5 737,652 + GFF998 0.74 -0.4 737,761 + GFF998 0.83 +0.8 737,762 - GFF998 0.83 -0.2 737,815 - GFF998 0.88 -0.1 737,815 - GFF998 0.88 +0.2 737,964 - -1.2 737,969 + -0.3 737,969 + +0.1 737,969 + -1.0 737,970 - +0.2 737,970 - -0.2 738,156 - GFF999 0.47 +0.3 738,156 - GFF999 0.47 +0.6 738,156 - GFF999 0.47 +0.1 738,161 + GFF999 0.49 +0.2 738,162 - GFF999 0.49 +0.2 738,212 + GFF999 0.61 +0.0 738,366 - +0.4 738,525 + GFF1000 0.11 -0.2 738,588 + GFF1000 0.17 +0.7 738,588 + GFF1000 0.17 +1.0 738,589 - GFF1000 0.17 -0.0 738,937 - GFF1000 0.45 -0.6 739,338 + GFF1000 0.77 +0.1 739,338 + GFF1000 0.77 +0.6 739,338 + GFF1000 0.77 +0.3 739,338 + GFF1000 0.77 +0.7 739,339 - GFF1000 0.77 +0.4 739,339 - GFF1000 0.77 +0.0 739,542 - -0.1 739,542 - -0.2 739,542 - +0.1 739,542 - -0.3 739,614 + -0.3 739,854 - GFF1001 0.23 -0.5 740,043 + GFF1001 0.46 +0.5 740,044 - GFF1001 0.46 +0.8 740,044 - GFF1001 0.46 +1.1 740,301 - GFF1001 0.77 -0.3 740,493 + -0.3 740,494 - +0.4 740,540 - +0.7 740,549 + -1.2 740,549 + -0.6 740,550 - +0.0 740,550 - -0.2
Or see this region's nucleotide sequence