Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS21325

Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.4 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Pseudomonas DC3000 grown in LB; 0.4 X
21,848	+	fliD	COO64_RS21315	0.79	+1.6
21,849	-	fliD	COO64_RS21315	0.79	+1.2
21,849	-	fliD	COO64_RS21315	0.79	+0.8
21,849	-	fliD	COO64_RS21315	0.79	+1.3
21,868	-	fliD	COO64_RS21315	0.80	+0.8
21,868	-	fliD	COO64_RS21315	0.80	+0.9
21,917	+	fliD	COO64_RS21315	0.83	+1.0
21,917	+	fliD	COO64_RS21315	0.83	+1.6
21,917	+	fliD	COO64_RS21315	0.83	+0.4
21,918	-	fliD	COO64_RS21315	0.84	+1.8
21,971	+	fliD	COO64_RS21315	0.87	+0.6
22,105	+				+0.3
22,106	-				+0.6
22,141	-				+0.5
22,149	+				+0.6
22,149	+				+0.9
22,149	+				+0.9
22,150	-				+0.9
22,153	+				+1.9
22,153	+				+0.3
22,153	+				+1.1
22,153	+				-0.1
22,153	+				+0.2
22,154	-				-1.5
22,154	-				-0.1
22,154	-				+0.4
22,154	-				+0.4
22,154	-				-0.1
22,154	-				+0.0
22,167	+				+1.2
22,256	+				-2.3
22,256	+				-0.7
22,256	+				-0.7
22,256	+				+1.1
22,256	+				+0.3
22,256	+				-0.0
22,257	-				-0.4
22,257	-				-0.5
22,342	+		COO64_RS21320	0.32	+1.8
22,342	+		COO64_RS21320	0.32	-1.1
22,343	-		COO64_RS21320	0.32	+0.3
22,343	-		COO64_RS21320	0.32	+0.1
22,343	-		COO64_RS21320	0.32	+0.8
22,343	-		COO64_RS21320	0.32	+0.1
22,343	-		COO64_RS21320	0.32	+0.9
22,346	+		COO64_RS21320	0.33	-0.8
22,346	+		COO64_RS21320	0.33	+1.8
22,347	-		COO64_RS21320	0.33	-0.0
22,347	-		COO64_RS21320	0.33	-1.2
22,347	-		COO64_RS21320	0.33	+0.3
22,388	-		COO64_RS21320	0.44	+1.4
22,388	-		COO64_RS21320	0.44	-0.2
22,388	-		COO64_RS21320	0.44	-0.7
22,388	-		COO64_RS21320	0.44	+0.3
22,561	-				+0.8
22,585	+				+0.8
22,585	+				+0.1
22,586	-				-0.6
22,629	+				+0.9
22,630	-				-1.0
22,630	-				+0.8
22,630	-				+0.2
22,656	+				+1.7
22,656	+				+1.0
22,782	+		COO64_RS21325	0.14	+1.2
22,782	+		COO64_RS21325	0.14	+1.2
22,783	-		COO64_RS21325	0.14	+1.3
22,783	-		COO64_RS21325	0.14	+0.7
22,789	+		COO64_RS21325	0.15	+2.7
22,789	+		COO64_RS21325	0.15	+1.3
22,798	-		COO64_RS21325	0.16	+1.1
22,854	+		COO64_RS21325	0.22	+0.2
22,854	+		COO64_RS21325	0.22	-0.1
22,855	-		COO64_RS21325	0.23	+2.3
22,855	-		COO64_RS21325	0.23	+1.6
22,855	-		COO64_RS21325	0.23	+0.7
22,865	-		COO64_RS21325	0.24	+0.7
22,865	-		COO64_RS21325	0.24	+1.2
22,865	-		COO64_RS21325	0.24	+1.1
22,865	-		COO64_RS21325	0.24	-0.7
22,905	+		COO64_RS21325	0.29	+1.3
23,017	-		COO64_RS21325	0.42	+0.9
23,017	-		COO64_RS21325	0.42	+0.7
23,184	+		COO64_RS21325	0.61	+0.6
23,184	+		COO64_RS21325	0.61	+1.1
23,238	+		COO64_RS21325	0.68	+1.4
23,238	+		COO64_RS21325	0.68	+1.9
23,238	+		COO64_RS21325	0.68	+0.9
23,238	+		COO64_RS21325	0.68	+1.2
23,239	-		COO64_RS21325	0.68	-0.5
23,298	+		COO64_RS21325	0.75	+1.9
23,299	-		COO64_RS21325	0.75	+1.9
23,299	-		COO64_RS21325	0.75	+1.6
23,299	-		COO64_RS21325	0.75	+0.0
23,353	-		COO64_RS21325	0.81	+1.3
23,353	-		COO64_RS21325	0.81	+1.8
23,484	+				+0.5
23,484	+				+0.2
23,484	+				+0.5
23,484	+				+1.1
23,484	+				+1.0
23,484	+				+1.3
23,484	+				+0.6
23,484	+				+0.2
23,484	+				+0.4
23,484	+				+0.9
23,484	+				+1.2
23,485	-				+0.7
23,485	-				+1.0
23,490	+				+1.5
23,490	+				+1.0
23,490	+				+0.8
23,490	+				+1.5
23,535	-				+0.3
23,573	+				+0.2
23,574	-				+0.5
23,574	-				+0.7
23,574	-				+0.6
23,586	+				+0.6
23,586	+				+0.8
23,587	-				+0.5
23,587	-				+1.1
23,589	+				+1.0
23,589	+				+1.2
23,589	+				+0.4
23,589	+				+1.3
23,589	+				+1.0
23,590	-				+1.3
23,590	-				-0.1
23,590	-				+1.4
23,590	-				+1.1
23,593	+				+0.1
23,593	+				+1.2
23,593	+				+0.6
23,593	+				+0.5
23,593	+				+1.0
23,593	+				+1.1
23,593	+				+0.9
23,594	-				+0.6
23,594	-				+1.9
23,594	-				+0.3
23,594	-				+1.2
23,693	+				+0.5
23,693	+				+0.0
23,745	+				-0.5
23,745	+				+0.2
23,835	+				+0.7
23,835	+				+0.4
23,835	+				-0.7
23,836	-				-0.0
23,836	-				-2.1
23,888	+				-0.7
23,953	+				-0.3
23,953	+				-0.1
23,953	+				+0.1
23,953	+				-0.1
23,953	+				-0.8
23,953	+				-0.9
23,954	-				-0.5
23,954	-				+0.7
23,954	-				+0.2
23,954	-				-0.3
23,954	-				+0.3
23,954	-				-0.4
23,955	+				-0.0
23,955	+				-0.3
23,956	-				-1.5
23,956	-				-0.3
23,956	-				+0.5
23,956	-				+0.8
23,956	-				-0.8
23,956	-				-1.2
24,085	+		COO64_RS21330	0.14	+0.0
24,086	-		COO64_RS21330	0.14	-0.3
24,086	-		COO64_RS21330	0.14	-0.1
24,086	-		COO64_RS21330	0.14	-0.0
24,086	-		COO64_RS21330	0.14	-1.1
24,086	-		COO64_RS21330	0.14	-0.7
24,088	+		COO64_RS21330	0.14	-0.5
24,457	-		COO64_RS21330	0.54	-1.1
24,457	-		COO64_RS21330	0.54	-0.5
24,457	-		COO64_RS21330	0.54	-0.6