Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02629 and MPMX26_02630 are separated by 88 nucleotides MPMX26_02630 and MPMX26_02631 are separated by 126 nucleotides MPMX26_02631 and MPMX26_02632 are separated by 102 nucleotides MPMX26_02632 and MPMX26_02633 are separated by 11 nucleotides MPMX26_02633 and MPMX26_02634 are separated by 27 nucleotides
MPMX26_02629: MPMX26_02629 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 2,725,818 to 2,727,599
_02629
MPMX26_02630: MPMX26_02630 - Oligoribonuclease, at 2,727,688 to 2,728,251
_02630
MPMX26_02631: MPMX26_02631 - Small ribosomal subunit biogenesis GTPase RsgA, at 2,728,378 to 2,729,436
_02631
MPMX26_02632: MPMX26_02632 - putative protein YibN, at 2,729,539 to 2,729,961
_02632
MPMX26_02633: MPMX26_02633 - Glutaredoxin 3, at 2,729,973 to 2,730,230
_02633
MPMX26_02634: MPMX26_02634 - Protein-export protein SecB, at 2,730,258 to 2,730,710
_02634
Position (kb)
2728
2729
2730 Strain fitness (log2 ratio)
-2
-1
0
1 at 2727.388 kb on + strand, within MPMX26_02629 at 2727.388 kb on + strand, within MPMX26_02629 at 2727.388 kb on + strand, within MPMX26_02629 at 2727.388 kb on + strand, within MPMX26_02629 at 2727.388 kb on + strand, within MPMX26_02629 at 2727.393 kb on + strand, within MPMX26_02629 at 2727.396 kb on - strand, within MPMX26_02629 at 2727.396 kb on - strand, within MPMX26_02629 at 2727.398 kb on + strand, within MPMX26_02629 at 2727.424 kb on + strand at 2727.479 kb on - strand at 2727.490 kb on + strand at 2727.490 kb on + strand at 2727.490 kb on + strand at 2727.490 kb on + strand at 2727.490 kb on + strand at 2727.498 kb on - strand at 2727.498 kb on - strand at 2727.498 kb on - strand at 2727.498 kb on - strand at 2727.503 kb on + strand at 2727.508 kb on + strand at 2727.536 kb on + strand at 2727.536 kb on + strand at 2727.542 kb on + strand at 2727.544 kb on - strand at 2727.578 kb on + strand at 2727.578 kb on + strand at 2727.586 kb on - strand at 2727.586 kb on - strand at 2727.586 kb on - strand at 2728.458 kb on + strand at 2728.492 kb on + strand, within MPMX26_02631 at 2728.492 kb on + strand, within MPMX26_02631 at 2728.497 kb on + strand, within MPMX26_02631 at 2728.534 kb on + strand, within MPMX26_02631 at 2728.559 kb on + strand, within MPMX26_02631 at 2728.603 kb on + strand, within MPMX26_02631 at 2728.653 kb on + strand, within MPMX26_02631 at 2728.696 kb on + strand, within MPMX26_02631 at 2728.702 kb on + strand, within MPMX26_02631 at 2728.735 kb on + strand, within MPMX26_02631 at 2728.764 kb on + strand, within MPMX26_02631 at 2728.930 kb on + strand, within MPMX26_02631 at 2728.936 kb on + strand, within MPMX26_02631 at 2728.957 kb on + strand, within MPMX26_02631 at 2728.962 kb on + strand, within MPMX26_02631 at 2728.986 kb on + strand, within MPMX26_02631 at 2728.986 kb on + strand, within MPMX26_02631 at 2728.986 kb on + strand, within MPMX26_02631 at 2729.047 kb on + strand, within MPMX26_02631 at 2729.059 kb on + strand, within MPMX26_02631 at 2729.059 kb on + strand, within MPMX26_02631 at 2729.061 kb on + strand, within MPMX26_02631 at 2729.140 kb on + strand, within MPMX26_02631 at 2729.145 kb on + strand, within MPMX26_02631 at 2729.318 kb on + strand, within MPMX26_02631 at 2729.360 kb on + strand at 2729.399 kb on + strand at 2729.403 kb on + strand at 2729.412 kb on + strand at 2729.463 kb on + strand at 2729.549 kb on + strand at 2729.869 kb on + strand, within MPMX26_02632 at 2729.887 kb on + strand, within MPMX26_02632 at 2729.909 kb on + strand, within MPMX26_02632 at 2729.914 kb on + strand, within MPMX26_02632 at 2729.914 kb on + strand, within MPMX26_02632 at 2729.914 kb on + strand, within MPMX26_02632 at 2729.914 kb on + strand, within MPMX26_02632 at 2729.914 kb on + strand, within MPMX26_02632 at 2729.914 kb on + strand, within MPMX26_02632 at 2729.914 kb on + strand, within MPMX26_02632 at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.920 kb on + strand at 2729.955 kb on + strand at 2730.004 kb on + strand, within MPMX26_02633 at 2730.008 kb on + strand, within MPMX26_02633 at 2730.008 kb on - strand, within MPMX26_02633 at 2730.019 kb on + strand, within MPMX26_02633 at 2730.019 kb on + strand, within MPMX26_02633 at 2730.025 kb on + strand, within MPMX26_02633 at 2730.030 kb on + strand, within MPMX26_02633 at 2730.044 kb on + strand, within MPMX26_02633 at 2730.051 kb on + strand, within MPMX26_02633 at 2730.052 kb on + strand, within MPMX26_02633 at 2730.052 kb on + strand, within MPMX26_02633 at 2730.090 kb on + strand, within MPMX26_02633 at 2730.090 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.182 kb on + strand, within MPMX26_02633 at 2730.192 kb on + strand, within MPMX26_02633 at 2730.204 kb on + strand, within MPMX26_02633 at 2730.224 kb on + strand at 2730.282 kb on + strand at 2730.302 kb on + strand at 2730.431 kb on + strand, within MPMX26_02634 at 2730.436 kb on + strand, within MPMX26_02634
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 2,727,388 + MPMX26_02629 0.88 +0.9 2,727,388 + MPMX26_02629 0.88 +1.2 2,727,388 + MPMX26_02629 0.88 -0.4 2,727,388 + MPMX26_02629 0.88 -0.1 2,727,388 + MPMX26_02629 0.88 +0.9 2,727,393 + MPMX26_02629 0.88 +0.1 2,727,396 - MPMX26_02629 0.89 +0.2 2,727,396 - MPMX26_02629 0.89 +1.3 2,727,398 + MPMX26_02629 0.89 +0.6 2,727,424 + +0.5 2,727,479 - -0.0 2,727,490 + +0.2 2,727,490 + -0.5 2,727,490 + -0.5 2,727,490 + +0.6 2,727,490 + +1.2 2,727,498 - -0.2 2,727,498 - +0.0 2,727,498 - -0.0 2,727,498 - +0.0 2,727,503 + +0.1 2,727,508 + -0.3 2,727,536 + +0.0 2,727,536 + -0.0 2,727,542 + -0.2 2,727,544 - +0.6 2,727,578 + -0.1 2,727,578 + -0.1 2,727,586 - -0.4 2,727,586 - +0.6 2,727,586 - +0.1 2,728,458 + +1.3 2,728,492 + MPMX26_02631 0.11 -0.4 2,728,492 + MPMX26_02631 0.11 -2.0 2,728,497 + MPMX26_02631 0.11 -0.1 2,728,534 + MPMX26_02631 0.15 -0.3 2,728,559 + MPMX26_02631 0.17 -0.4 2,728,603 + MPMX26_02631 0.21 -0.7 2,728,653 + MPMX26_02631 0.26 +1.3 2,728,696 + MPMX26_02631 0.30 -0.4 2,728,702 + MPMX26_02631 0.31 -0.1 2,728,735 + MPMX26_02631 0.34 +0.5 2,728,764 + MPMX26_02631 0.36 +0.1 2,728,930 + MPMX26_02631 0.52 -1.3 2,728,936 + MPMX26_02631 0.53 -1.1 2,728,957 + MPMX26_02631 0.55 +1.4 2,728,962 + MPMX26_02631 0.55 -0.7 2,728,986 + MPMX26_02631 0.57 -0.8 2,728,986 + MPMX26_02631 0.57 -1.1 2,728,986 + MPMX26_02631 0.57 +0.6 2,729,047 + MPMX26_02631 0.63 -0.3 2,729,059 + MPMX26_02631 0.64 -0.4 2,729,059 + MPMX26_02631 0.64 -0.4 2,729,061 + MPMX26_02631 0.64 -1.3 2,729,140 + MPMX26_02631 0.72 +1.6 2,729,145 + MPMX26_02631 0.72 -0.9 2,729,318 + MPMX26_02631 0.89 -1.1 2,729,360 + +0.3 2,729,399 + -0.2 2,729,403 + -1.0 2,729,412 + +0.2 2,729,463 + +0.6 2,729,549 + -0.6 2,729,869 + MPMX26_02632 0.78 +0.3 2,729,887 + MPMX26_02632 0.82 +0.3 2,729,909 + MPMX26_02632 0.87 +0.0 2,729,914 + MPMX26_02632 0.89 -0.1 2,729,914 + MPMX26_02632 0.89 +0.4 2,729,914 + MPMX26_02632 0.89 +0.1 2,729,914 + MPMX26_02632 0.89 +0.8 2,729,914 + MPMX26_02632 0.89 -0.5 2,729,914 + MPMX26_02632 0.89 +0.0 2,729,914 + MPMX26_02632 0.89 -0.9 2,729,920 + +0.4 2,729,920 + +0.4 2,729,920 + -0.1 2,729,920 + -0.0 2,729,920 + +1.1 2,729,920 + -0.4 2,729,920 + +0.2 2,729,920 + +0.1 2,729,920 + +0.2 2,729,920 + +0.7 2,729,920 + +0.2 2,729,920 + +0.2 2,729,920 + -0.1 2,729,955 + +0.1 2,730,004 + MPMX26_02633 0.12 +0.1 2,730,008 + MPMX26_02633 0.14 +0.2 2,730,008 - MPMX26_02633 0.14 -0.4 2,730,019 + MPMX26_02633 0.18 -0.1 2,730,019 + MPMX26_02633 0.18 -0.5 2,730,025 + MPMX26_02633 0.20 +0.4 2,730,030 + MPMX26_02633 0.22 +0.3 2,730,044 + MPMX26_02633 0.28 +0.0 2,730,051 + MPMX26_02633 0.30 +0.2 2,730,052 + MPMX26_02633 0.31 -0.1 2,730,052 + MPMX26_02633 0.31 +0.4 2,730,090 + MPMX26_02633 0.45 +0.5 2,730,090 + MPMX26_02633 0.45 +0.4 2,730,182 + MPMX26_02633 0.81 -0.0 2,730,182 + MPMX26_02633 0.81 -0.1 2,730,182 + MPMX26_02633 0.81 +0.4 2,730,182 + MPMX26_02633 0.81 -0.7 2,730,182 + MPMX26_02633 0.81 -0.1 2,730,182 + MPMX26_02633 0.81 -0.3 2,730,182 + MPMX26_02633 0.81 -0.5 2,730,182 + MPMX26_02633 0.81 -0.8 2,730,182 + MPMX26_02633 0.81 +0.0 2,730,182 + MPMX26_02633 0.81 -0.0 2,730,182 + MPMX26_02633 0.81 +0.1 2,730,182 + MPMX26_02633 0.81 +0.3 2,730,182 + MPMX26_02633 0.81 +0.6 2,730,182 + MPMX26_02633 0.81 +0.2 2,730,192 + MPMX26_02633 0.85 +0.5 2,730,204 + MPMX26_02633 0.90 +0.1 2,730,224 + +0.3 2,730,282 + +0.9 2,730,302 + -0.1 2,730,431 + MPMX26_02634 0.38 +0.0 2,730,436 + MPMX26_02634 0.39 -0.0
Or see this region's nucleotide sequence