Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02631

Experiment: L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02629 and MPMX26_02630 are separated by 88 nucleotidesMPMX26_02630 and MPMX26_02631 are separated by 126 nucleotidesMPMX26_02631 and MPMX26_02632 are separated by 102 nucleotidesMPMX26_02632 and MPMX26_02633 are separated by 11 nucleotidesMPMX26_02633 and MPMX26_02634 are separated by 27 nucleotides MPMX26_02629: MPMX26_02629 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 2,725,818 to 2,727,599 _02629 MPMX26_02630: MPMX26_02630 - Oligoribonuclease, at 2,727,688 to 2,728,251 _02630 MPMX26_02631: MPMX26_02631 - Small ribosomal subunit biogenesis GTPase RsgA, at 2,728,378 to 2,729,436 _02631 MPMX26_02632: MPMX26_02632 - putative protein YibN, at 2,729,539 to 2,729,961 _02632 MPMX26_02633: MPMX26_02633 - Glutaredoxin 3, at 2,729,973 to 2,730,230 _02633 MPMX26_02634: MPMX26_02634 - Protein-export protein SecB, at 2,730,258 to 2,730,710 _02634 Position (kb) 2728 2729 2730Strain fitness (log2 ratio) -2 -1 0 1at 2727.388 kb on + strand, within MPMX26_02629at 2727.388 kb on + strand, within MPMX26_02629at 2727.388 kb on + strand, within MPMX26_02629at 2727.388 kb on + strand, within MPMX26_02629at 2727.388 kb on + strand, within MPMX26_02629at 2727.393 kb on + strand, within MPMX26_02629at 2727.396 kb on - strand, within MPMX26_02629at 2727.396 kb on - strand, within MPMX26_02629at 2727.398 kb on + strand, within MPMX26_02629at 2727.424 kb on + strandat 2727.479 kb on - strandat 2727.490 kb on + strandat 2727.490 kb on + strandat 2727.490 kb on + strandat 2727.490 kb on + strandat 2727.490 kb on + strandat 2727.498 kb on - strandat 2727.498 kb on - strandat 2727.498 kb on - strandat 2727.498 kb on - strandat 2727.503 kb on + strandat 2727.508 kb on + strandat 2727.536 kb on + strandat 2727.536 kb on + strandat 2727.542 kb on + strandat 2727.544 kb on - strandat 2727.578 kb on + strandat 2727.578 kb on + strandat 2727.586 kb on - strandat 2727.586 kb on - strandat 2727.586 kb on - strandat 2728.458 kb on + strandat 2728.492 kb on + strand, within MPMX26_02631at 2728.492 kb on + strand, within MPMX26_02631at 2728.497 kb on + strand, within MPMX26_02631at 2728.534 kb on + strand, within MPMX26_02631at 2728.559 kb on + strand, within MPMX26_02631at 2728.603 kb on + strand, within MPMX26_02631at 2728.653 kb on + strand, within MPMX26_02631at 2728.696 kb on + strand, within MPMX26_02631at 2728.702 kb on + strand, within MPMX26_02631at 2728.735 kb on + strand, within MPMX26_02631at 2728.764 kb on + strand, within MPMX26_02631at 2728.930 kb on + strand, within MPMX26_02631at 2728.936 kb on + strand, within MPMX26_02631at 2728.957 kb on + strand, within MPMX26_02631at 2728.962 kb on + strand, within MPMX26_02631at 2728.986 kb on + strand, within MPMX26_02631at 2728.986 kb on + strand, within MPMX26_02631at 2728.986 kb on + strand, within MPMX26_02631at 2729.047 kb on + strand, within MPMX26_02631at 2729.059 kb on + strand, within MPMX26_02631at 2729.059 kb on + strand, within MPMX26_02631at 2729.061 kb on + strand, within MPMX26_02631at 2729.140 kb on + strand, within MPMX26_02631at 2729.145 kb on + strand, within MPMX26_02631at 2729.318 kb on + strand, within MPMX26_02631at 2729.360 kb on + strandat 2729.399 kb on + strandat 2729.403 kb on + strandat 2729.412 kb on + strandat 2729.463 kb on + strandat 2729.549 kb on + strandat 2729.869 kb on + strand, within MPMX26_02632at 2729.887 kb on + strand, within MPMX26_02632at 2729.909 kb on + strand, within MPMX26_02632at 2729.914 kb on + strand, within MPMX26_02632at 2729.914 kb on + strand, within MPMX26_02632at 2729.914 kb on + strand, within MPMX26_02632at 2729.914 kb on + strand, within MPMX26_02632at 2729.914 kb on + strand, within MPMX26_02632at 2729.914 kb on + strand, within MPMX26_02632at 2729.914 kb on + strand, within MPMX26_02632at 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.920 kb on + strandat 2729.955 kb on + strandat 2730.004 kb on + strand, within MPMX26_02633at 2730.008 kb on + strand, within MPMX26_02633at 2730.008 kb on - strand, within MPMX26_02633at 2730.019 kb on + strand, within MPMX26_02633at 2730.019 kb on + strand, within MPMX26_02633at 2730.025 kb on + strand, within MPMX26_02633at 2730.030 kb on + strand, within MPMX26_02633at 2730.044 kb on + strand, within MPMX26_02633at 2730.051 kb on + strand, within MPMX26_02633at 2730.052 kb on + strand, within MPMX26_02633at 2730.052 kb on + strand, within MPMX26_02633at 2730.090 kb on + strand, within MPMX26_02633at 2730.090 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.182 kb on + strand, within MPMX26_02633at 2730.192 kb on + strand, within MPMX26_02633at 2730.204 kb on + strand, within MPMX26_02633at 2730.224 kb on + strandat 2730.282 kb on + strandat 2730.302 kb on + strandat 2730.431 kb on + strand, within MPMX26_02634at 2730.436 kb on + strand, within MPMX26_02634

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
remove
2,727,388 + MPMX26_02629 0.88 +0.9
2,727,388 + MPMX26_02629 0.88 +1.2
2,727,388 + MPMX26_02629 0.88 -0.4
2,727,388 + MPMX26_02629 0.88 -0.1
2,727,388 + MPMX26_02629 0.88 +0.9
2,727,393 + MPMX26_02629 0.88 +0.1
2,727,396 - MPMX26_02629 0.89 +0.2
2,727,396 - MPMX26_02629 0.89 +1.3
2,727,398 + MPMX26_02629 0.89 +0.6
2,727,424 + +0.5
2,727,479 - -0.0
2,727,490 + +0.2
2,727,490 + -0.5
2,727,490 + -0.5
2,727,490 + +0.6
2,727,490 + +1.2
2,727,498 - -0.2
2,727,498 - +0.0
2,727,498 - -0.0
2,727,498 - +0.0
2,727,503 + +0.1
2,727,508 + -0.3
2,727,536 + +0.0
2,727,536 + -0.0
2,727,542 + -0.2
2,727,544 - +0.6
2,727,578 + -0.1
2,727,578 + -0.1
2,727,586 - -0.4
2,727,586 - +0.6
2,727,586 - +0.1
2,728,458 + +1.3
2,728,492 + MPMX26_02631 0.11 -0.4
2,728,492 + MPMX26_02631 0.11 -2.0
2,728,497 + MPMX26_02631 0.11 -0.1
2,728,534 + MPMX26_02631 0.15 -0.3
2,728,559 + MPMX26_02631 0.17 -0.4
2,728,603 + MPMX26_02631 0.21 -0.7
2,728,653 + MPMX26_02631 0.26 +1.3
2,728,696 + MPMX26_02631 0.30 -0.4
2,728,702 + MPMX26_02631 0.31 -0.1
2,728,735 + MPMX26_02631 0.34 +0.5
2,728,764 + MPMX26_02631 0.36 +0.1
2,728,930 + MPMX26_02631 0.52 -1.3
2,728,936 + MPMX26_02631 0.53 -1.1
2,728,957 + MPMX26_02631 0.55 +1.4
2,728,962 + MPMX26_02631 0.55 -0.7
2,728,986 + MPMX26_02631 0.57 -0.8
2,728,986 + MPMX26_02631 0.57 -1.1
2,728,986 + MPMX26_02631 0.57 +0.6
2,729,047 + MPMX26_02631 0.63 -0.3
2,729,059 + MPMX26_02631 0.64 -0.4
2,729,059 + MPMX26_02631 0.64 -0.4
2,729,061 + MPMX26_02631 0.64 -1.3
2,729,140 + MPMX26_02631 0.72 +1.6
2,729,145 + MPMX26_02631 0.72 -0.9
2,729,318 + MPMX26_02631 0.89 -1.1
2,729,360 + +0.3
2,729,399 + -0.2
2,729,403 + -1.0
2,729,412 + +0.2
2,729,463 + +0.6
2,729,549 + -0.6
2,729,869 + MPMX26_02632 0.78 +0.3
2,729,887 + MPMX26_02632 0.82 +0.3
2,729,909 + MPMX26_02632 0.87 +0.0
2,729,914 + MPMX26_02632 0.89 -0.1
2,729,914 + MPMX26_02632 0.89 +0.4
2,729,914 + MPMX26_02632 0.89 +0.1
2,729,914 + MPMX26_02632 0.89 +0.8
2,729,914 + MPMX26_02632 0.89 -0.5
2,729,914 + MPMX26_02632 0.89 +0.0
2,729,914 + MPMX26_02632 0.89 -0.9
2,729,920 + +0.4
2,729,920 + +0.4
2,729,920 + -0.1
2,729,920 + -0.0
2,729,920 + +1.1
2,729,920 + -0.4
2,729,920 + +0.2
2,729,920 + +0.1
2,729,920 + +0.2
2,729,920 + +0.7
2,729,920 + +0.2
2,729,920 + +0.2
2,729,920 + -0.1
2,729,955 + +0.1
2,730,004 + MPMX26_02633 0.12 +0.1
2,730,008 + MPMX26_02633 0.14 +0.2
2,730,008 - MPMX26_02633 0.14 -0.4
2,730,019 + MPMX26_02633 0.18 -0.1
2,730,019 + MPMX26_02633 0.18 -0.5
2,730,025 + MPMX26_02633 0.20 +0.4
2,730,030 + MPMX26_02633 0.22 +0.3
2,730,044 + MPMX26_02633 0.28 +0.0
2,730,051 + MPMX26_02633 0.30 +0.2
2,730,052 + MPMX26_02633 0.31 -0.1
2,730,052 + MPMX26_02633 0.31 +0.4
2,730,090 + MPMX26_02633 0.45 +0.5
2,730,090 + MPMX26_02633 0.45 +0.4
2,730,182 + MPMX26_02633 0.81 -0.0
2,730,182 + MPMX26_02633 0.81 -0.1
2,730,182 + MPMX26_02633 0.81 +0.4
2,730,182 + MPMX26_02633 0.81 -0.7
2,730,182 + MPMX26_02633 0.81 -0.1
2,730,182 + MPMX26_02633 0.81 -0.3
2,730,182 + MPMX26_02633 0.81 -0.5
2,730,182 + MPMX26_02633 0.81 -0.8
2,730,182 + MPMX26_02633 0.81 +0.0
2,730,182 + MPMX26_02633 0.81 -0.0
2,730,182 + MPMX26_02633 0.81 +0.1
2,730,182 + MPMX26_02633 0.81 +0.3
2,730,182 + MPMX26_02633 0.81 +0.6
2,730,182 + MPMX26_02633 0.81 +0.2
2,730,192 + MPMX26_02633 0.85 +0.5
2,730,204 + MPMX26_02633 0.90 +0.1
2,730,224 + +0.3
2,730,282 + +0.9
2,730,302 + -0.1
2,730,431 + MPMX26_02634 0.38 +0.0
2,730,436 + MPMX26_02634 0.39 -0.0

Or see this region's nucleotide sequence