Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01878

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01876 and MPMX26_01877 overlap by 8 nucleotidesMPMX26_01877 and MPMX26_01878 are separated by 109 nucleotidesMPMX26_01878 and MPMX26_01879 are separated by 102 nucleotides MPMX26_01876: MPMX26_01876 - tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ, at 1,918,024 to 1,918,866 _01876 MPMX26_01877: MPMX26_01877 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, at 1,918,859 to 1,919,677 _01877 MPMX26_01878: MPMX26_01878 - hypothetical protein, at 1,919,787 to 1,920,761 _01878 MPMX26_01879: MPMX26_01879 - hypothetical protein, at 1,920,864 to 1,922,915 _01879 Position (kb) 1919 1920 1921Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1918.800 kb on + strandat 1918.807 kb on + strandat 1918.807 kb on + strandat 1918.812 kb on + strandat 1919.383 kb on + strand, within MPMX26_01877at 1919.383 kb on + strand, within MPMX26_01877at 1919.451 kb on + strand, within MPMX26_01877at 1919.487 kb on + strand, within MPMX26_01877at 1919.564 kb on + strand, within MPMX26_01877at 1919.651 kb on + strandat 1919.651 kb on + strandat 1919.651 kb on + strandat 1919.799 kb on + strandat 1919.799 kb on + strandat 1919.799 kb on + strandat 1919.799 kb on + strandat 1919.799 kb on + strandat 1919.804 kb on + strandat 1919.812 kb on - strandat 1919.820 kb on + strandat 1919.840 kb on + strandat 1919.868 kb on + strandat 1920.003 kb on + strand, within MPMX26_01878at 1920.010 kb on + strand, within MPMX26_01878at 1920.015 kb on + strand, within MPMX26_01878at 1920.017 kb on + strand, within MPMX26_01878at 1920.017 kb on + strand, within MPMX26_01878at 1920.017 kb on + strand, within MPMX26_01878at 1920.032 kb on + strand, within MPMX26_01878at 1920.032 kb on + strand, within MPMX26_01878at 1920.032 kb on + strand, within MPMX26_01878at 1920.032 kb on + strand, within MPMX26_01878at 1920.042 kb on + strand, within MPMX26_01878at 1920.179 kb on + strand, within MPMX26_01878at 1920.179 kb on + strand, within MPMX26_01878at 1920.193 kb on + strand, within MPMX26_01878at 1920.254 kb on + strand, within MPMX26_01878at 1920.294 kb on + strand, within MPMX26_01878at 1920.294 kb on + strand, within MPMX26_01878at 1920.294 kb on + strand, within MPMX26_01878at 1920.319 kb on + strand, within MPMX26_01878at 1920.319 kb on + strand, within MPMX26_01878at 1920.319 kb on + strand, within MPMX26_01878at 1920.319 kb on + strand, within MPMX26_01878at 1920.334 kb on + strand, within MPMX26_01878at 1920.334 kb on + strand, within MPMX26_01878at 1920.334 kb on + strand, within MPMX26_01878at 1920.334 kb on + strand, within MPMX26_01878at 1920.433 kb on + strand, within MPMX26_01878at 1920.433 kb on + strand, within MPMX26_01878at 1920.433 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.443 kb on + strand, within MPMX26_01878at 1920.451 kb on + strand, within MPMX26_01878at 1920.482 kb on + strand, within MPMX26_01878at 1920.615 kb on + strand, within MPMX26_01878at 1920.623 kb on + strand, within MPMX26_01878at 1920.701 kb on + strandat 1920.701 kb on + strandat 1920.708 kb on + strandat 1920.708 kb on + strandat 1920.708 kb on + strandat 1920.708 kb on + strandat 1920.713 kb on + strandat 1920.713 kb on + strandat 1920.713 kb on + strandat 1920.723 kb on + strandat 1920.723 kb on + strandat 1920.723 kb on + strandat 1920.723 kb on + strandat 1920.723 kb on + strandat 1920.723 kb on + strandat 1920.723 kb on + strandat 1920.723 kb on + strandat 1920.733 kb on + strandat 1920.733 kb on + strandat 1920.733 kb on + strandat 1920.739 kb on + strandat 1920.739 kb on + strandat 1920.739 kb on + strandat 1920.739 kb on + strandat 1920.739 kb on + strandat 1920.936 kb on - strandat 1920.961 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,918,800 + -0.3
1,918,807 + +0.2
1,918,807 + +0.3
1,918,812 + +0.4
1,919,383 + MPMX26_01877 0.64 -6.0
1,919,383 + MPMX26_01877 0.64 -4.9
1,919,451 + MPMX26_01877 0.72 -1.9
1,919,487 + MPMX26_01877 0.77 -2.9
1,919,564 + MPMX26_01877 0.86 -1.5
1,919,651 + -1.8
1,919,651 + -1.5
1,919,651 + -1.7
1,919,799 + -0.6
1,919,799 + -0.6
1,919,799 + +0.1
1,919,799 + -1.2
1,919,799 + +0.2
1,919,804 + -0.7
1,919,812 - -0.3
1,919,820 + +0.0
1,919,840 + -0.3
1,919,868 + -0.9
1,920,003 + MPMX26_01878 0.22 -0.5
1,920,010 + MPMX26_01878 0.23 -1.6
1,920,015 + MPMX26_01878 0.23 -0.2
1,920,017 + MPMX26_01878 0.24 -1.1
1,920,017 + MPMX26_01878 0.24 -0.5
1,920,017 + MPMX26_01878 0.24 -0.3
1,920,032 + MPMX26_01878 0.25 -0.1
1,920,032 + MPMX26_01878 0.25 -0.5
1,920,032 + MPMX26_01878 0.25 -0.4
1,920,032 + MPMX26_01878 0.25 -0.0
1,920,042 + MPMX26_01878 0.26 -1.0
1,920,179 + MPMX26_01878 0.40 -1.1
1,920,179 + MPMX26_01878 0.40 -0.1
1,920,193 + MPMX26_01878 0.42 -0.1
1,920,254 + MPMX26_01878 0.48 -0.1
1,920,294 + MPMX26_01878 0.52 -0.3
1,920,294 + MPMX26_01878 0.52 -0.0
1,920,294 + MPMX26_01878 0.52 -0.4
1,920,319 + MPMX26_01878 0.55 +0.9
1,920,319 + MPMX26_01878 0.55 -0.9
1,920,319 + MPMX26_01878 0.55 -2.0
1,920,319 + MPMX26_01878 0.55 -0.2
1,920,334 + MPMX26_01878 0.56 +0.2
1,920,334 + MPMX26_01878 0.56 +0.4
1,920,334 + MPMX26_01878 0.56 -0.6
1,920,334 + MPMX26_01878 0.56 +1.4
1,920,433 + MPMX26_01878 0.66 +0.9
1,920,433 + MPMX26_01878 0.66 +0.9
1,920,433 + MPMX26_01878 0.66 +0.3
1,920,443 + MPMX26_01878 0.67 -0.7
1,920,443 + MPMX26_01878 0.67 -0.4
1,920,443 + MPMX26_01878 0.67 -1.4
1,920,443 + MPMX26_01878 0.67 -1.1
1,920,443 + MPMX26_01878 0.67 +0.0
1,920,443 + MPMX26_01878 0.67 -1.8
1,920,443 + MPMX26_01878 0.67 -0.7
1,920,443 + MPMX26_01878 0.67 -0.6
1,920,443 + MPMX26_01878 0.67 -0.1
1,920,443 + MPMX26_01878 0.67 -0.1
1,920,443 + MPMX26_01878 0.67 -0.1
1,920,443 + MPMX26_01878 0.67 -0.3
1,920,443 + MPMX26_01878 0.67 -1.2
1,920,443 + MPMX26_01878 0.67 -0.5
1,920,443 + MPMX26_01878 0.67 -0.1
1,920,443 + MPMX26_01878 0.67 -0.5
1,920,443 + MPMX26_01878 0.67 -0.8
1,920,443 + MPMX26_01878 0.67 -1.5
1,920,443 + MPMX26_01878 0.67 -0.9
1,920,443 + MPMX26_01878 0.67 -0.8
1,920,443 + MPMX26_01878 0.67 -0.5
1,920,443 + MPMX26_01878 0.67 -0.6
1,920,443 + MPMX26_01878 0.67 -2.0
1,920,443 + MPMX26_01878 0.67 -0.6
1,920,443 + MPMX26_01878 0.67 -0.8
1,920,443 + MPMX26_01878 0.67 -0.9
1,920,443 + MPMX26_01878 0.67 -0.8
1,920,443 + MPMX26_01878 0.67 -0.8
1,920,443 + MPMX26_01878 0.67 +0.3
1,920,443 + MPMX26_01878 0.67 -0.7
1,920,443 + MPMX26_01878 0.67 +0.4
1,920,443 + MPMX26_01878 0.67 -1.0
1,920,451 + MPMX26_01878 0.68 -0.6
1,920,482 + MPMX26_01878 0.71 -0.4
1,920,615 + MPMX26_01878 0.85 -0.9
1,920,623 + MPMX26_01878 0.86 -0.4
1,920,701 + +0.5
1,920,701 + +0.1
1,920,708 + -0.4
1,920,708 + -0.2
1,920,708 + -0.0
1,920,708 + +0.3
1,920,713 + -0.4
1,920,713 + +0.0
1,920,713 + +0.4
1,920,723 + +0.3
1,920,723 + +0.1
1,920,723 + -0.1
1,920,723 + +0.2
1,920,723 + +0.2
1,920,723 + +0.3
1,920,723 + +0.2
1,920,723 + +0.1
1,920,733 + -0.4
1,920,733 + +0.2
1,920,733 + -0.1
1,920,739 + +0.0
1,920,739 + +0.5
1,920,739 + +0.9
1,920,739 + +0.2
1,920,739 + +0.1
1,920,936 - -0.9
1,920,961 + -0.2

Or see this region's nucleotide sequence