Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01250

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01249 and MPMX26_01250 are separated by 52 nucleotidesMPMX26_01250 and MPMX26_01251 are separated by 256 nucleotides MPMX26_01249: MPMX26_01249 - HTH-type transcriptional regulator HdfR, at 1,321,018 to 1,321,962 _01249 MPMX26_01250: MPMX26_01250 - hypothetical protein, at 1,322,015 to 1,323,142 _01250 MPMX26_01251: MPMX26_01251 - Lipoyl synthase, at 1,323,399 to 1,324,382 _01251 Position (kb) 1322 1323 1324Strain fitness (log2 ratio) -3 -2 -1 0 1at 1321.093 kb on + strandat 1321.093 kb on + strandat 1321.150 kb on + strand, within MPMX26_01249at 1321.152 kb on + strand, within MPMX26_01249at 1321.225 kb on + strand, within MPMX26_01249at 1321.245 kb on + strand, within MPMX26_01249at 1321.273 kb on + strand, within MPMX26_01249at 1321.273 kb on + strand, within MPMX26_01249at 1321.368 kb on + strand, within MPMX26_01249at 1321.409 kb on + strand, within MPMX26_01249at 1321.417 kb on + strand, within MPMX26_01249at 1321.435 kb on + strand, within MPMX26_01249at 1321.495 kb on + strand, within MPMX26_01249at 1321.495 kb on + strand, within MPMX26_01249at 1321.519 kb on + strand, within MPMX26_01249at 1321.614 kb on + strand, within MPMX26_01249at 1321.677 kb on + strand, within MPMX26_01249at 1321.689 kb on + strand, within MPMX26_01249at 1321.803 kb on + strand, within MPMX26_01249at 1321.803 kb on + strand, within MPMX26_01249at 1321.830 kb on + strand, within MPMX26_01249at 1322.335 kb on + strand, within MPMX26_01250at 1322.889 kb on + strand, within MPMX26_01250at 1324.082 kb on - strand, within MPMX26_01251

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,321,093 + -1.8
1,321,093 + -2.3
1,321,150 + MPMX26_01249 0.14 -3.4
1,321,152 + MPMX26_01249 0.14 -1.4
1,321,225 + MPMX26_01249 0.22 -0.8
1,321,245 + MPMX26_01249 0.24 -1.9
1,321,273 + MPMX26_01249 0.27 -3.2
1,321,273 + MPMX26_01249 0.27 -1.8
1,321,368 + MPMX26_01249 0.37 -2.7
1,321,409 + MPMX26_01249 0.41 -1.4
1,321,417 + MPMX26_01249 0.42 -2.1
1,321,435 + MPMX26_01249 0.44 -1.2
1,321,495 + MPMX26_01249 0.50 -1.4
1,321,495 + MPMX26_01249 0.50 -2.6
1,321,519 + MPMX26_01249 0.53 -2.0
1,321,614 + MPMX26_01249 0.63 -0.6
1,321,677 + MPMX26_01249 0.70 -2.0
1,321,689 + MPMX26_01249 0.71 -1.0
1,321,803 + MPMX26_01249 0.83 -2.0
1,321,803 + MPMX26_01249 0.83 -1.4
1,321,830 + MPMX26_01249 0.86 -2.3
1,322,335 + MPMX26_01250 0.28 -0.5
1,322,889 + MPMX26_01250 0.77 -0.1
1,324,082 - MPMX26_01251 0.69 -0.6

Or see this region's nucleotide sequence