Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_01066 and MPMX26_01067 are separated by 70 nucleotides MPMX26_01067 and MPMX26_01068 are separated by 180 nucleotides MPMX26_01068 and MPMX26_01069 overlap by 1 nucleotides MPMX26_01069 and MPMX26_01070 are separated by 79 nucleotides
MPMX26_01066: MPMX26_01066 - L-lysine 2,3-aminomutase, at 1,132,680 to 1,133,696
_01066
MPMX26_01067: MPMX26_01067 - Elongation factor P, at 1,133,767 to 1,134,336
_01067
MPMX26_01068: MPMX26_01068 - Peptide transporter CstA, at 1,134,517 to 1,136,622
_01068
MPMX26_01069: MPMX26_01069 - hypothetical protein, at 1,136,622 to 1,136,924
_01069
MPMX26_01070: MPMX26_01070 - hypothetical protein, at 1,137,004 to 1,137,963
_01070
Position (kb)
1134
1135
1136
1137 Strain fitness (log2 ratio)
-1
0
1 at 1134.329 kb on + strand at 1134.329 kb on + strand at 1134.365 kb on + strand at 1134.738 kb on + strand, within MPMX26_01068 at 1134.912 kb on + strand, within MPMX26_01068 at 1134.912 kb on + strand, within MPMX26_01068 at 1135.074 kb on + strand, within MPMX26_01068 at 1135.074 kb on + strand, within MPMX26_01068 at 1135.087 kb on + strand, within MPMX26_01068 at 1135.169 kb on + strand, within MPMX26_01068 at 1135.348 kb on + strand, within MPMX26_01068 at 1135.978 kb on + strand, within MPMX26_01068 at 1136.203 kb on + strand, within MPMX26_01068 at 1136.538 kb on - strand at 1136.572 kb on + strand at 1136.599 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 1,134,329 + +0.0 1,134,329 + +0.1 1,134,365 + +0.3 1,134,738 + MPMX26_01068 0.10 +0.7 1,134,912 + MPMX26_01068 0.19 -0.7 1,134,912 + MPMX26_01068 0.19 +1.0 1,135,074 + MPMX26_01068 0.26 -0.2 1,135,074 + MPMX26_01068 0.26 -1.1 1,135,087 + MPMX26_01068 0.27 +1.1 1,135,169 + MPMX26_01068 0.31 +0.2 1,135,348 + MPMX26_01068 0.39 +1.4 1,135,978 + MPMX26_01068 0.69 -1.2 1,136,203 + MPMX26_01068 0.80 +1.0 1,136,538 - -0.4 1,136,572 + +0.0 1,136,599 + +0.1
Or see this region's nucleotide sequence