Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01068

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01066 and MPMX26_01067 are separated by 70 nucleotidesMPMX26_01067 and MPMX26_01068 are separated by 180 nucleotidesMPMX26_01068 and MPMX26_01069 overlap by 1 nucleotidesMPMX26_01069 and MPMX26_01070 are separated by 79 nucleotides MPMX26_01066: MPMX26_01066 - L-lysine 2,3-aminomutase, at 1,132,680 to 1,133,696 _01066 MPMX26_01067: MPMX26_01067 - Elongation factor P, at 1,133,767 to 1,134,336 _01067 MPMX26_01068: MPMX26_01068 - Peptide transporter CstA, at 1,134,517 to 1,136,622 _01068 MPMX26_01069: MPMX26_01069 - hypothetical protein, at 1,136,622 to 1,136,924 _01069 MPMX26_01070: MPMX26_01070 - hypothetical protein, at 1,137,004 to 1,137,963 _01070 Position (kb) 1134 1135 1136 1137Strain fitness (log2 ratio) -1 0 1at 1134.329 kb on + strandat 1134.329 kb on + strandat 1134.365 kb on + strandat 1134.738 kb on + strand, within MPMX26_01068at 1134.912 kb on + strand, within MPMX26_01068at 1134.912 kb on + strand, within MPMX26_01068at 1135.074 kb on + strand, within MPMX26_01068at 1135.074 kb on + strand, within MPMX26_01068at 1135.087 kb on + strand, within MPMX26_01068at 1135.169 kb on + strand, within MPMX26_01068at 1135.348 kb on + strand, within MPMX26_01068at 1135.978 kb on + strand, within MPMX26_01068at 1136.203 kb on + strand, within MPMX26_01068at 1136.538 kb on - strandat 1136.572 kb on + strandat 1136.599 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,134,329 + +0.0
1,134,329 + +0.1
1,134,365 + +0.3
1,134,738 + MPMX26_01068 0.10 +0.7
1,134,912 + MPMX26_01068 0.19 -0.7
1,134,912 + MPMX26_01068 0.19 +1.0
1,135,074 + MPMX26_01068 0.26 -0.2
1,135,074 + MPMX26_01068 0.26 -1.1
1,135,087 + MPMX26_01068 0.27 +1.1
1,135,169 + MPMX26_01068 0.31 +0.2
1,135,348 + MPMX26_01068 0.39 +1.4
1,135,978 + MPMX26_01068 0.69 -1.2
1,136,203 + MPMX26_01068 0.80 +1.0
1,136,538 - -0.4
1,136,572 + +0.0
1,136,599 + +0.1

Or see this region's nucleotide sequence