Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF961 and GFF962 are separated by 126 nucleotides GFF962 and GFF963 are separated by 79 nucleotides
GFF961 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 696,679 to 697,935
GFF961
GFF962 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 698,062 to 698,844
GFF962
GFF963 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 698,924 to 699,916
GFF963
Position (kb) 698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 697.095 kb on + strand, within GFF961 at 697.095 kb on + strand, within GFF961 at 697.095 kb on + strand, within GFF961 at 697.095 kb on + strand, within GFF961 at 697.095 kb on + strand, within GFF961 at 697.095 kb on + strand, within GFF961 at 697.095 kb on + strand, within GFF961 at 697.096 kb on - strand, within GFF961 at 697.096 kb on - strand, within GFF961 at 697.096 kb on - strand, within GFF961 at 697.096 kb on - strand, within GFF961 at 697.175 kb on + strand, within GFF961 at 697.175 kb on + strand, within GFF961 at 697.175 kb on + strand, within GFF961 at 697.175 kb on + strand, within GFF961 at 697.176 kb on - strand, within GFF961 at 697.176 kb on - strand, within GFF961 at 697.176 kb on - strand, within GFF961 at 697.176 kb on - strand, within GFF961 at 697.305 kb on + strand, within GFF961 at 697.406 kb on + strand, within GFF961 at 697.407 kb on - strand, within GFF961 at 697.460 kb on + strand, within GFF961 at 697.460 kb on + strand, within GFF961 at 697.461 kb on - strand, within GFF961 at 697.490 kb on + strand, within GFF961 at 697.491 kb on - strand, within GFF961 at 697.491 kb on - strand, within GFF961 at 697.554 kb on + strand, within GFF961 at 697.622 kb on + strand, within GFF961 at 697.667 kb on + strand, within GFF961 at 697.667 kb on + strand, within GFF961 at 697.668 kb on - strand, within GFF961 at 697.668 kb on - strand, within GFF961 at 697.668 kb on - strand, within GFF961 at 697.756 kb on + strand, within GFF961 at 697.756 kb on + strand, within GFF961 at 697.756 kb on + strand, within GFF961 at 697.756 kb on + strand, within GFF961 at 697.766 kb on + strand, within GFF961 at 697.766 kb on + strand, within GFF961 at 697.766 kb on + strand, within GFF961 at 697.808 kb on + strand, within GFF961 at 697.808 kb on + strand, within GFF961 at 697.808 kb on + strand, within GFF961 at 697.809 kb on - strand, within GFF961 at 697.826 kb on + strand at 697.827 kb on - strand at 697.827 kb on - strand at 697.831 kb on + strand at 697.832 kb on - strand at 697.832 kb on - strand at 697.832 kb on - strand at 697.832 kb on - strand at 697.832 kb on - strand at 697.832 kb on - strand at 697.953 kb on - strand at 697.953 kb on - strand at 697.953 kb on - strand at 697.956 kb on + strand at 697.957 kb on - strand at 697.957 kb on - strand at 697.980 kb on + strand at 697.981 kb on - strand at 697.981 kb on - strand at 697.983 kb on + strand at 697.983 kb on + strand at 697.983 kb on + strand at 697.984 kb on - strand at 698.009 kb on + strand at 698.009 kb on + strand at 698.009 kb on + strand at 698.009 kb on + strand at 698.010 kb on - strand at 698.010 kb on - strand at 698.010 kb on - strand at 698.010 kb on - strand at 698.010 kb on - strand at 698.010 kb on - strand at 698.047 kb on + strand at 698.058 kb on - strand at 698.088 kb on + strand at 698.088 kb on + strand at 698.088 kb on + strand at 698.088 kb on + strand at 698.088 kb on + strand at 698.088 kb on + strand at 698.088 kb on + strand at 698.088 kb on + strand at 698.088 kb on + strand at 698.089 kb on - strand at 698.089 kb on - strand at 698.089 kb on - strand at 698.089 kb on - strand at 698.089 kb on - strand at 698.089 kb on - strand at 698.090 kb on + strand at 698.090 kb on + strand at 698.090 kb on + strand at 698.090 kb on + strand at 698.090 kb on + strand at 698.091 kb on - strand at 698.091 kb on - strand at 698.091 kb on - strand at 698.091 kb on - strand at 698.131 kb on + strand at 698.131 kb on + strand at 698.131 kb on + strand at 698.131 kb on + strand at 698.132 kb on - strand at 698.132 kb on - strand at 698.132 kb on - strand at 698.132 kb on - strand at 698.132 kb on - strand at 698.135 kb on + strand at 698.135 kb on + strand at 698.135 kb on + strand at 698.135 kb on + strand at 698.136 kb on - strand at 698.136 kb on - strand at 698.136 kb on - strand at 698.136 kb on - strand at 698.213 kb on + strand, within GFF962 at 698.213 kb on + strand, within GFF962 at 698.213 kb on + strand, within GFF962 at 698.213 kb on + strand, within GFF962 at 698.213 kb on + strand, within GFF962 at 698.429 kb on + strand, within GFF962 at 698.471 kb on + strand, within GFF962 at 698.471 kb on + strand, within GFF962 at 698.471 kb on + strand, within GFF962 at 698.472 kb on - strand, within GFF962 at 698.472 kb on - strand, within GFF962 at 698.472 kb on - strand, within GFF962 at 698.472 kb on - strand, within GFF962 at 698.472 kb on - strand, within GFF962 at 698.477 kb on + strand, within GFF962 at 698.478 kb on - strand, within GFF962 at 698.478 kb on - strand, within GFF962 at 698.478 kb on - strand, within GFF962 at 698.478 kb on - strand, within GFF962 at 698.484 kb on + strand, within GFF962 at 698.484 kb on + strand, within GFF962 at 698.484 kb on + strand, within GFF962 at 698.485 kb on - strand, within GFF962 at 698.494 kb on - strand, within GFF962 at 698.494 kb on - strand, within GFF962 at 698.671 kb on + strand, within GFF962 at 698.671 kb on + strand, within GFF962 at 698.672 kb on - strand, within GFF962 at 698.806 kb on + strand at 698.806 kb on + strand at 698.806 kb on + strand at 698.806 kb on + strand at 698.806 kb on + strand at 698.806 kb on + strand at 698.806 kb on + strand at 698.806 kb on + strand at 698.807 kb on - strand at 698.807 kb on - strand at 698.807 kb on - strand at 698.816 kb on + strand at 698.816 kb on + strand at 698.816 kb on + strand at 698.816 kb on + strand at 698.816 kb on + strand at 698.816 kb on + strand at 698.816 kb on + strand at 698.817 kb on - strand at 698.817 kb on - strand at 698.817 kb on - strand at 698.817 kb on - strand at 698.817 kb on - strand at 698.817 kb on - strand at 698.817 kb on - strand at 698.817 kb on - strand at 698.817 kb on - strand at 698.817 kb on - strand at 698.817 kb on - strand at 698.844 kb on + strand at 698.845 kb on + strand at 698.845 kb on + strand at 698.846 kb on - strand at 698.846 kb on - strand at 698.846 kb on - strand at 698.846 kb on - strand at 698.926 kb on - strand at 698.926 kb on - strand at 698.937 kb on + strand at 698.961 kb on + strand at 698.961 kb on + strand at 698.961 kb on + strand at 698.961 kb on + strand at 698.961 kb on + strand at 698.961 kb on + strand at 698.962 kb on - strand at 698.962 kb on - strand at 698.962 kb on - strand at 698.979 kb on + strand at 698.979 kb on + strand at 698.979 kb on + strand at 698.979 kb on + strand at 698.979 kb on + strand at 698.979 kb on + strand at 698.980 kb on - strand at 698.980 kb on - strand at 698.980 kb on - strand at 698.980 kb on - strand at 698.980 kb on - strand at 698.980 kb on - strand at 698.998 kb on + strand at 698.999 kb on - strand at 698.999 kb on - strand at 699.019 kb on + strand at 699.019 kb on + strand at 699.020 kb on - strand at 699.020 kb on - strand at 699.036 kb on + strand, within GFF963 at 699.159 kb on + strand, within GFF963 at 699.159 kb on + strand, within GFF963 at 699.159 kb on + strand, within GFF963 at 699.159 kb on + strand, within GFF963 at 699.160 kb on - strand, within GFF963 at 699.160 kb on - strand, within GFF963 at 699.160 kb on - strand, within GFF963 at 699.160 kb on - strand, within GFF963 at 699.160 kb on - strand, within GFF963 at 699.223 kb on - strand, within GFF963 at 699.223 kb on - strand, within GFF963 at 699.255 kb on + strand, within GFF963 at 699.255 kb on + strand, within GFF963 at 699.255 kb on + strand, within GFF963 at 699.256 kb on - strand, within GFF963 at 699.327 kb on + strand, within GFF963 at 699.327 kb on + strand, within GFF963 at 699.327 kb on + strand, within GFF963 at 699.327 kb on + strand, within GFF963 at 699.327 kb on + strand, within GFF963 at 699.327 kb on + strand, within GFF963 at 699.327 kb on + strand, within GFF963 at 699.328 kb on - strand, within GFF963 at 699.328 kb on - strand, within GFF963 at 699.328 kb on - strand, within GFF963 at 699.328 kb on - strand, within GFF963 at 699.330 kb on + strand, within GFF963 at 699.330 kb on + strand, within GFF963 at 699.330 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.462 kb on + strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.463 kb on - strand, within GFF963 at 699.465 kb on + strand, within GFF963 at 699.465 kb on + strand, within GFF963 at 699.465 kb on + strand, within GFF963 at 699.465 kb on + strand, within GFF963 at 699.465 kb on + strand, within GFF963 at 699.465 kb on + strand, within GFF963 at 699.466 kb on - strand, within GFF963 at 699.466 kb on - strand, within GFF963 at 699.612 kb on + strand, within GFF963 at 699.612 kb on + strand, within GFF963 at 699.612 kb on + strand, within GFF963 at 699.612 kb on + strand, within GFF963 at 699.612 kb on + strand, within GFF963 at 699.612 kb on + strand, within GFF963 at 699.612 kb on + strand, within GFF963 at 699.612 kb on + strand, within GFF963 at 699.612 kb on + strand, within GFF963 at 699.613 kb on - strand, within GFF963 at 699.613 kb on - strand, within GFF963 at 699.613 kb on - strand, within GFF963 at 699.613 kb on - strand, within GFF963 at 699.613 kb on - strand, within GFF963 at 699.716 kb on + strand, within GFF963 at 699.716 kb on + strand, within GFF963 at 699.735 kb on + strand, within GFF963 at 699.736 kb on - strand, within GFF963 at 699.736 kb on - strand, within GFF963 at 699.736 kb on - strand, within GFF963 at 699.762 kb on + strand, within GFF963 at 699.839 kb on + strand at 699.839 kb on + strand at 699.839 kb on + strand at 699.840 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 697,095 + GFF961 0.33 -0.2 697,095 + GFF961 0.33 -0.3 697,095 + GFF961 0.33 +0.9 697,095 + GFF961 0.33 -0.5 697,095 + GFF961 0.33 +0.1 697,095 + GFF961 0.33 +0.3 697,095 + GFF961 0.33 -0.1 697,096 - GFF961 0.33 +0.1 697,096 - GFF961 0.33 -0.5 697,096 - GFF961 0.33 -0.2 697,096 - GFF961 0.33 -0.2 697,175 + GFF961 0.39 +1.2 697,175 + GFF961 0.39 -0.3 697,175 + GFF961 0.39 -0.3 697,175 + GFF961 0.39 +0.6 697,176 - GFF961 0.40 -1.0 697,176 - GFF961 0.40 -0.4 697,176 - GFF961 0.40 -0.2 697,176 - GFF961 0.40 -0.6 697,305 + GFF961 0.50 +0.2 697,406 + GFF961 0.58 -0.2 697,407 - GFF961 0.58 -2.3 697,460 + GFF961 0.62 -0.4 697,460 + GFF961 0.62 -0.1 697,461 - GFF961 0.62 -2.8 697,490 + GFF961 0.65 +0.1 697,491 - GFF961 0.65 +0.3 697,491 - GFF961 0.65 +0.5 697,554 + GFF961 0.70 -0.1 697,622 + GFF961 0.75 -0.0 697,667 + GFF961 0.79 +0.1 697,667 + GFF961 0.79 -0.1 697,668 - GFF961 0.79 +1.2 697,668 - GFF961 0.79 +0.6 697,668 - GFF961 0.79 +0.3 697,756 + GFF961 0.86 +0.5 697,756 + GFF961 0.86 +0.1 697,756 + GFF961 0.86 -0.1 697,756 + GFF961 0.86 +0.8 697,766 + GFF961 0.86 -0.9 697,766 + GFF961 0.86 -0.6 697,766 + GFF961 0.86 -1.1 697,808 + GFF961 0.90 -1.1 697,808 + GFF961 0.90 +0.4 697,808 + GFF961 0.90 +0.5 697,809 - GFF961 0.90 +0.8 697,826 + +1.3 697,827 - -0.1 697,827 - -0.3 697,831 + -0.1 697,832 - -0.9 697,832 - -0.5 697,832 - -0.3 697,832 - +0.5 697,832 - +0.5 697,832 - +0.0 697,953 - -0.8 697,953 - +0.3 697,953 - +0.1 697,956 + -1.0 697,957 - -0.4 697,957 - -0.9 697,980 + +0.6 697,981 - -0.5 697,981 - +1.2 697,983 + -0.9 697,983 + +0.1 697,983 + -0.0 697,984 - +0.1 698,009 + -0.3 698,009 + +0.6 698,009 + -0.6 698,009 + -0.4 698,010 - +0.6 698,010 - +0.4 698,010 - -1.0 698,010 - +0.1 698,010 - +1.0 698,010 - -0.2 698,047 + +1.3 698,058 - -0.4 698,088 + -0.8 698,088 + -1.1 698,088 + -0.3 698,088 + -0.1 698,088 + -0.4 698,088 + +0.1 698,088 + +1.1 698,088 + +0.1 698,088 + -0.1 698,089 - -0.3 698,089 - -0.0 698,089 - -0.2 698,089 - -0.2 698,089 - +0.1 698,089 - +0.6 698,090 + +0.2 698,090 + -0.1 698,090 + -0.3 698,090 + +0.4 698,090 + +0.4 698,091 - +0.1 698,091 - -0.2 698,091 - -0.2 698,091 - -0.9 698,131 + -0.2 698,131 + +0.0 698,131 + +0.3 698,131 + +1.3 698,132 - +0.0 698,132 - +0.4 698,132 - -0.2 698,132 - -0.1 698,132 - +0.9 698,135 + +0.1 698,135 + +0.0 698,135 + +0.2 698,135 + +0.1 698,136 - -0.7 698,136 - -0.2 698,136 - +0.2 698,136 - -0.2 698,213 + GFF962 0.19 -0.1 698,213 + GFF962 0.19 -0.0 698,213 + GFF962 0.19 +0.2 698,213 + GFF962 0.19 -1.6 698,213 + GFF962 0.19 -0.9 698,429 + GFF962 0.47 -0.3 698,471 + GFF962 0.52 -2.1 698,471 + GFF962 0.52 +0.2 698,471 + GFF962 0.52 -0.2 698,472 - GFF962 0.52 -2.1 698,472 - GFF962 0.52 -1.6 698,472 - GFF962 0.52 +0.1 698,472 - GFF962 0.52 -0.3 698,472 - GFF962 0.52 +0.3 698,477 + GFF962 0.53 -0.4 698,478 - GFF962 0.53 -0.3 698,478 - GFF962 0.53 +0.5 698,478 - GFF962 0.53 -0.2 698,478 - GFF962 0.53 +0.5 698,484 + GFF962 0.54 +0.3 698,484 + GFF962 0.54 -0.7 698,484 + GFF962 0.54 -0.0 698,485 - GFF962 0.54 -0.4 698,494 - GFF962 0.55 +0.1 698,494 - GFF962 0.55 -0.6 698,671 + GFF962 0.78 +0.6 698,671 + GFF962 0.78 +1.0 698,672 - GFF962 0.78 +0.7 698,806 + +0.2 698,806 + +0.1 698,806 + -0.5 698,806 + -0.2 698,806 + +0.3 698,806 + +0.3 698,806 + +0.3 698,806 + +0.0 698,807 - +0.4 698,807 - -0.5 698,807 - -0.4 698,816 + -0.4 698,816 + -0.1 698,816 + -1.2 698,816 + +0.3 698,816 + +0.4 698,816 + -1.3 698,816 + -0.4 698,817 - -0.3 698,817 - +0.2 698,817 - +0.1 698,817 - +0.2 698,817 - +0.3 698,817 - -0.3 698,817 - -0.5 698,817 - +0.1 698,817 - -1.1 698,817 - -0.5 698,817 - -2.4 698,844 + +0.8 698,845 + -0.9 698,845 + +0.1 698,846 - -0.0 698,846 - +1.2 698,846 - -0.3 698,846 - -0.0 698,926 - -0.0 698,926 - -0.3 698,937 + +0.9 698,961 + -0.4 698,961 + +1.1 698,961 + -0.3 698,961 + +1.2 698,961 + -0.1 698,961 + +1.0 698,962 - -0.0 698,962 - +0.1 698,962 - +0.4 698,979 + +0.4 698,979 + +0.6 698,979 + -0.2 698,979 + +0.4 698,979 + -0.9 698,979 + +0.1 698,980 - -0.3 698,980 - +0.1 698,980 - +0.4 698,980 - +0.0 698,980 - +0.9 698,980 - -0.0 698,998 + +0.1 698,999 - +1.1 698,999 - -0.8 699,019 + +0.7 699,019 + -0.4 699,020 - +0.0 699,020 - -0.0 699,036 + GFF963 0.11 +0.2 699,159 + GFF963 0.24 -0.2 699,159 + GFF963 0.24 +0.4 699,159 + GFF963 0.24 -0.4 699,159 + GFF963 0.24 +0.3 699,160 - GFF963 0.24 +0.2 699,160 - GFF963 0.24 +0.2 699,160 - GFF963 0.24 -0.1 699,160 - GFF963 0.24 -0.2 699,160 - GFF963 0.24 -0.4 699,223 - GFF963 0.30 -0.2 699,223 - GFF963 0.30 -0.4 699,255 + GFF963 0.33 -0.1 699,255 + GFF963 0.33 +0.1 699,255 + GFF963 0.33 -0.4 699,256 - GFF963 0.33 +0.9 699,327 + GFF963 0.41 -0.7 699,327 + GFF963 0.41 +0.1 699,327 + GFF963 0.41 +0.2 699,327 + GFF963 0.41 -0.2 699,327 + GFF963 0.41 -0.8 699,327 + GFF963 0.41 -0.2 699,327 + GFF963 0.41 -0.3 699,328 - GFF963 0.41 +1.2 699,328 - GFF963 0.41 -0.6 699,328 - GFF963 0.41 -0.6 699,328 - GFF963 0.41 -0.4 699,330 + GFF963 0.41 +0.1 699,330 + GFF963 0.41 +0.1 699,330 + GFF963 0.41 +0.9 699,462 + GFF963 0.54 +1.5 699,462 + GFF963 0.54 +0.2 699,462 + GFF963 0.54 -0.4 699,462 + GFF963 0.54 -0.6 699,462 + GFF963 0.54 -0.5 699,462 + GFF963 0.54 +0.9 699,462 + GFF963 0.54 -0.2 699,462 + GFF963 0.54 +1.2 699,462 + GFF963 0.54 +0.1 699,462 + GFF963 0.54 +1.3 699,462 + GFF963 0.54 +0.5 699,463 - GFF963 0.54 -0.3 699,463 - GFF963 0.54 +1.6 699,463 - GFF963 0.54 -0.3 699,463 - GFF963 0.54 +0.4 699,463 - GFF963 0.54 +0.6 699,463 - GFF963 0.54 -0.5 699,463 - GFF963 0.54 -0.1 699,463 - GFF963 0.54 -0.4 699,463 - GFF963 0.54 +0.1 699,463 - GFF963 0.54 +0.1 699,463 - GFF963 0.54 +0.6 699,465 + GFF963 0.54 -0.3 699,465 + GFF963 0.54 -0.3 699,465 + GFF963 0.54 +0.0 699,465 + GFF963 0.54 -0.2 699,465 + GFF963 0.54 -0.5 699,465 + GFF963 0.54 +0.5 699,466 - GFF963 0.55 -0.3 699,466 - GFF963 0.55 -0.6 699,612 + GFF963 0.69 +0.1 699,612 + GFF963 0.69 -0.2 699,612 + GFF963 0.69 -0.6 699,612 + GFF963 0.69 +0.8 699,612 + GFF963 0.69 -0.0 699,612 + GFF963 0.69 +0.0 699,612 + GFF963 0.69 +0.1 699,612 + GFF963 0.69 -0.1 699,612 + GFF963 0.69 -0.9 699,613 - GFF963 0.69 +0.4 699,613 - GFF963 0.69 -0.0 699,613 - GFF963 0.69 +0.3 699,613 - GFF963 0.69 -0.4 699,613 - GFF963 0.69 +0.1 699,716 + GFF963 0.80 -0.5 699,716 + GFF963 0.80 +0.7 699,735 + GFF963 0.82 -0.2 699,736 - GFF963 0.82 -0.5 699,736 - GFF963 0.82 +0.5 699,736 - GFF963 0.82 +0.7 699,762 + GFF963 0.84 +0.2 699,839 + +0.6 699,839 + +0.1 699,839 + -0.5 699,840 - +1.5
Or see this region's nucleotide sequence