Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF932 and GFF933 are separated by 9 nucleotides GFF933 and GFF934 are separated by 31 nucleotides GFF934 and GFF935 are separated by 45 nucleotides GFF935 and GFF936 are separated by 29 nucleotides
GFF932 - Thiolase, at 664,121 to 665,368
GFF932
GFF933 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 665,378 to 666,145
GFF933
GFF934 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 666,177 to 667,337
GFF934
GFF935 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 667,383 to 668,141
GFF935
GFF936 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 668,171 to 670,090
GFF936
Position (kb) 666
667
668 Strain fitness (log2 ratio) -1
0
1 at 665.506 kb on - strand, within GFF933 at 665.506 kb on - strand, within GFF933 at 665.935 kb on - strand, within GFF933 at 665.988 kb on - strand, within GFF933 at 666.089 kb on + strand at 666.090 kb on - strand at 666.090 kb on - strand at 666.091 kb on + strand at 666.091 kb on + strand at 666.092 kb on - strand at 666.092 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.396 kb on + strand, within GFF934 at 666.396 kb on + strand, within GFF934 at 666.397 kb on - strand, within GFF934 at 666.397 kb on - strand, within GFF934 at 666.409 kb on - strand, within GFF934 at 666.409 kb on - strand, within GFF934 at 666.630 kb on + strand, within GFF934 at 666.631 kb on - strand, within GFF934 at 666.631 kb on - strand, within GFF934 at 666.631 kb on - strand, within GFF934 at 666.673 kb on - strand, within GFF934 at 666.673 kb on - strand, within GFF934 at 666.701 kb on + strand, within GFF934 at 666.860 kb on - strand, within GFF934 at 666.915 kb on - strand, within GFF934 at 666.915 kb on - strand, within GFF934 at 667.146 kb on + strand, within GFF934 at 667.349 kb on + strand at 667.533 kb on + strand, within GFF935 at 667.533 kb on + strand, within GFF935 at 668.248 kb on + strand at 668.249 kb on - strand at 668.249 kb on - strand at 668.263 kb on + strand at 668.263 kb on + strand at 668.263 kb on + strand at 668.277 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 665,506 - GFF933 0.17 +0.4 665,506 - GFF933 0.17 +0.9 665,935 - GFF933 0.73 -0.2 665,988 - GFF933 0.79 +0.3 666,089 + -0.1 666,090 - +0.2 666,090 - +1.3 666,091 + +0.1 666,091 + +0.2 666,092 - +0.9 666,092 - +0.1 666,284 - +1.1 666,284 - -0.1 666,284 - -0.2 666,284 - -0.2 666,284 - -0.2 666,396 + GFF934 0.19 -0.1 666,396 + GFF934 0.19 +1.5 666,397 - GFF934 0.19 +0.2 666,397 - GFF934 0.19 -1.0 666,409 - GFF934 0.20 +0.2 666,409 - GFF934 0.20 -0.3 666,630 + GFF934 0.39 -0.2 666,631 - GFF934 0.39 +0.7 666,631 - GFF934 0.39 -0.5 666,631 - GFF934 0.39 -0.8 666,673 - GFF934 0.43 +0.7 666,673 - GFF934 0.43 -0.4 666,701 + GFF934 0.45 +1.1 666,860 - GFF934 0.59 +0.4 666,915 - GFF934 0.64 -0.2 666,915 - GFF934 0.64 -0.1 667,146 + GFF934 0.83 -0.3 667,349 + -0.2 667,533 + GFF935 0.20 -0.3 667,533 + GFF935 0.20 +0.6 668,248 + +0.8 668,249 - +0.5 668,249 - +0.7 668,263 + -0.1 668,263 + +1.1 668,263 + +0.9 668,277 + +1.1
Or see this region's nucleotide sequence