Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF929 and GFF930 are separated by 910 nucleotides GFF930 and GFF931 are separated by 13 nucleotides GFF931 and GFF932 are separated by 33 nucleotides
GFF929 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 660,894 to 661,139
GFF929
GFF930 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 662,050 to 663,228
GFF930
GFF931 - Enoyl-CoA hydratase (EC 4.2.1.17), at 663,242 to 664,087
GFF931
GFF932 - Thiolase, at 664,121 to 665,368
GFF932
Position (kb) 662
663
664 Strain fitness (log2 ratio) -1
0
1
2 at 661.238 kb on + strand at 661.239 kb on - strand at 661.326 kb on - strand at 661.329 kb on - strand at 661.727 kb on - strand at 661.727 kb on - strand at 661.807 kb on - strand at 661.851 kb on + strand at 661.851 kb on + strand at 661.852 kb on - strand at 661.852 kb on - strand at 661.967 kb on - strand at 662.038 kb on - strand at 662.038 kb on - strand at 662.038 kb on - strand at 662.038 kb on - strand at 662.047 kb on + strand at 662.047 kb on + strand at 662.048 kb on - strand at 662.048 kb on - strand at 662.048 kb on - strand at 662.048 kb on - strand at 662.048 kb on - strand at 662.048 kb on - strand at 662.050 kb on - strand at 662.135 kb on + strand at 662.182 kb on - strand, within GFF930 at 662.389 kb on + strand, within GFF930 at 662.389 kb on + strand, within GFF930 at 662.390 kb on - strand, within GFF930 at 662.506 kb on + strand, within GFF930 at 662.506 kb on + strand, within GFF930 at 662.506 kb on + strand, within GFF930 at 662.506 kb on + strand, within GFF930 at 662.507 kb on - strand, within GFF930 at 662.530 kb on + strand, within GFF930 at 662.530 kb on + strand, within GFF930 at 662.530 kb on + strand, within GFF930 at 662.530 kb on + strand, within GFF930 at 662.530 kb on + strand, within GFF930 at 662.530 kb on + strand, within GFF930 at 662.531 kb on - strand, within GFF930 at 662.531 kb on - strand, within GFF930 at 662.531 kb on - strand, within GFF930 at 662.570 kb on - strand, within GFF930 at 662.591 kb on + strand, within GFF930 at 662.854 kb on + strand, within GFF930 at 662.929 kb on + strand, within GFF930 at 662.929 kb on + strand, within GFF930 at 662.930 kb on - strand, within GFF930 at 663.112 kb on + strand at 663.782 kb on + strand, within GFF931 at 663.783 kb on - strand, within GFF931 at 663.907 kb on + strand, within GFF931 at 664.029 kb on + strand at 664.029 kb on + strand at 664.029 kb on + strand at 664.030 kb on - strand at 664.030 kb on - strand at 664.030 kb on - strand at 664.082 kb on + strand at 664.083 kb on - strand at 664.150 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 661,238 + -0.1 661,239 - +0.6 661,326 - -0.5 661,329 - +0.0 661,727 - +0.5 661,727 - -0.6 661,807 - +0.2 661,851 + -0.1 661,851 + +0.3 661,852 - +0.1 661,852 - -0.5 661,967 - +0.0 662,038 - +1.8 662,038 - -0.4 662,038 - -0.1 662,038 - -0.2 662,047 + -0.4 662,047 + +0.8 662,048 - -0.4 662,048 - -0.8 662,048 - +0.9 662,048 - -0.8 662,048 - -0.1 662,048 - -0.1 662,050 - +0.7 662,135 + -0.1 662,182 - GFF930 0.11 +0.1 662,389 + GFF930 0.29 -0.5 662,389 + GFF930 0.29 -1.1 662,390 - GFF930 0.29 -0.1 662,506 + GFF930 0.39 +0.3 662,506 + GFF930 0.39 -0.2 662,506 + GFF930 0.39 -0.7 662,506 + GFF930 0.39 +0.2 662,507 - GFF930 0.39 -0.6 662,530 + GFF930 0.41 +0.2 662,530 + GFF930 0.41 -0.7 662,530 + GFF930 0.41 +0.2 662,530 + GFF930 0.41 +0.1 662,530 + GFF930 0.41 -0.1 662,530 + GFF930 0.41 -0.8 662,531 - GFF930 0.41 +0.9 662,531 - GFF930 0.41 -0.2 662,531 - GFF930 0.41 +0.4 662,570 - GFF930 0.44 -0.4 662,591 + GFF930 0.46 +1.2 662,854 + GFF930 0.68 +0.2 662,929 + GFF930 0.75 -0.5 662,929 + GFF930 0.75 +0.2 662,930 - GFF930 0.75 -0.2 663,112 + +0.0 663,782 + GFF931 0.64 -0.6 663,783 - GFF931 0.64 -0.1 663,907 + GFF931 0.79 +0.3 664,029 + +0.4 664,029 + -0.6 664,029 + +0.4 664,030 - +0.4 664,030 - +0.0 664,030 - +0.2 664,082 + -0.4 664,083 - +0.3 664,150 - -0.0
Or see this region's nucleotide sequence