Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF884 and GFF885 are separated by 31 nucleotides GFF885 and GFF886 are separated by 54 nucleotides
GFF884 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 610,324 to 612,306
GFF884
GFF885 - Naphthoate synthase (EC 4.1.3.36), at 612,338 to 613,120
GFF885
GFF886 - Probable acyl-CoA dehydrogenase (EC 1.3.99.3), at 613,175 to 614,329
GFF886
Position (kb) 612
613
614 Strain fitness (log2 ratio) -1
0
1 at 611.359 kb on + strand, within GFF884 at 611.360 kb on - strand, within GFF884 at 611.450 kb on + strand, within GFF884 at 611.527 kb on + strand, within GFF884 at 611.528 kb on - strand, within GFF884 at 611.761 kb on + strand, within GFF884 at 611.761 kb on + strand, within GFF884 at 611.761 kb on + strand, within GFF884 at 611.761 kb on + strand, within GFF884 at 611.803 kb on + strand, within GFF884 at 611.803 kb on + strand, within GFF884 at 611.804 kb on - strand, within GFF884 at 611.816 kb on - strand, within GFF884 at 611.938 kb on + strand, within GFF884 at 611.938 kb on + strand, within GFF884 at 611.938 kb on + strand, within GFF884 at 611.939 kb on - strand, within GFF884 at 611.939 kb on - strand, within GFF884 at 611.939 kb on - strand, within GFF884 at 612.013 kb on + strand, within GFF884 at 612.014 kb on - strand, within GFF884 at 612.014 kb on - strand, within GFF884 at 612.016 kb on - strand, within GFF884 at 612.322 kb on - strand at 612.360 kb on - strand at 612.374 kb on + strand at 612.374 kb on + strand at 612.375 kb on - strand at 612.650 kb on + strand, within GFF885 at 612.650 kb on + strand, within GFF885 at 612.651 kb on - strand, within GFF885 at 612.651 kb on - strand, within GFF885 at 612.761 kb on + strand, within GFF885 at 612.761 kb on + strand, within GFF885 at 612.762 kb on - strand, within GFF885 at 612.762 kb on - strand, within GFF885 at 612.914 kb on + strand, within GFF885 at 612.914 kb on + strand, within GFF885 at 613.036 kb on + strand, within GFF885 at 613.036 kb on + strand, within GFF885 at 613.037 kb on - strand, within GFF885 at 613.040 kb on + strand, within GFF885 at 613.040 kb on + strand, within GFF885 at 613.041 kb on - strand, within GFF885 at 613.041 kb on - strand, within GFF885 at 613.190 kb on + strand at 613.340 kb on + strand, within GFF886 at 613.436 kb on + strand, within GFF886 at 613.436 kb on + strand, within GFF886 at 613.436 kb on + strand, within GFF886 at 613.436 kb on + strand, within GFF886 at 613.436 kb on + strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.487 kb on + strand, within GFF886 at 613.488 kb on - strand, within GFF886 at 613.605 kb on - strand, within GFF886 at 613.727 kb on - strand, within GFF886 at 613.875 kb on - strand, within GFF886 at 613.875 kb on - strand, within GFF886
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 611,359 + GFF884 0.52 -0.5 611,360 - GFF884 0.52 -0.0 611,450 + GFF884 0.57 -0.8 611,527 + GFF884 0.61 -0.2 611,528 - GFF884 0.61 -0.2 611,761 + GFF884 0.72 -0.2 611,761 + GFF884 0.72 -0.7 611,761 + GFF884 0.72 -0.9 611,761 + GFF884 0.72 -0.4 611,803 + GFF884 0.75 +1.7 611,803 + GFF884 0.75 -0.2 611,804 - GFF884 0.75 +0.2 611,816 - GFF884 0.75 +0.9 611,938 + GFF884 0.81 +1.3 611,938 + GFF884 0.81 -0.7 611,938 + GFF884 0.81 +0.6 611,939 - GFF884 0.81 -0.4 611,939 - GFF884 0.81 +0.3 611,939 - GFF884 0.81 -0.1 612,013 + GFF884 0.85 -0.4 612,014 - GFF884 0.85 +0.0 612,014 - GFF884 0.85 -0.3 612,016 - GFF884 0.85 -0.3 612,322 - -0.5 612,360 - -0.3 612,374 + -0.6 612,374 + +1.0 612,375 - -0.0 612,650 + GFF885 0.40 +0.2 612,650 + GFF885 0.40 -0.2 612,651 - GFF885 0.40 +0.3 612,651 - GFF885 0.40 -0.1 612,761 + GFF885 0.54 +0.5 612,761 + GFF885 0.54 -0.9 612,762 - GFF885 0.54 -0.0 612,762 - GFF885 0.54 +0.2 612,914 + GFF885 0.74 -0.3 612,914 + GFF885 0.74 -0.7 613,036 + GFF885 0.89 -1.3 613,036 + GFF885 0.89 -0.5 613,037 - GFF885 0.89 -0.4 613,040 + GFF885 0.90 -0.3 613,040 + GFF885 0.90 -0.7 613,041 - GFF885 0.90 -0.2 613,041 - GFF885 0.90 +0.4 613,190 + +0.1 613,340 + GFF886 0.14 -0.6 613,436 + GFF886 0.23 -0.3 613,436 + GFF886 0.23 +0.6 613,436 + GFF886 0.23 -1.0 613,436 + GFF886 0.23 +0.2 613,436 + GFF886 0.23 +0.9 613,437 - GFF886 0.23 +0.1 613,437 - GFF886 0.23 +0.6 613,437 - GFF886 0.23 +0.5 613,437 - GFF886 0.23 -0.6 613,437 - GFF886 0.23 -1.2 613,437 - GFF886 0.23 +0.2 613,487 + GFF886 0.27 +0.3 613,488 - GFF886 0.27 -0.3 613,605 - GFF886 0.37 -0.4 613,727 - GFF886 0.48 -1.2 613,875 - GFF886 0.61 -0.8 613,875 - GFF886 0.61 +0.6
Or see this region's nucleotide sequence