Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF791 and GFF792 are separated by 5 nucleotides GFF792 and GFF793 are separated by 8 nucleotides GFF793 and GFF794 are separated by 33 nucleotides
GFF791 - Aldose 1-epimerase (EC 5.1.3.3), at 486,372 to 487,430
GFF791
GFF792 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41), at 487,436 to 488,347
GFF792
GFF793 - Tricarboxylate transport protein TctC, at 488,356 to 489,327
GFF793
GFF794 - Glucarate dehydratase (EC 4.2.1.40), at 489,361 to 490,650
GFF794
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1
2 at 487.414 kb on + strand at 487.437 kb on + strand at 487.437 kb on + strand at 487.438 kb on - strand at 487.438 kb on - strand at 487.438 kb on - strand at 487.603 kb on - strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.669 kb on - strand, within GFF792 at 487.740 kb on + strand, within GFF792 at 487.741 kb on - strand, within GFF792 at 487.741 kb on - strand, within GFF792 at 487.752 kb on + strand, within GFF792 at 487.752 kb on + strand, within GFF792 at 487.752 kb on + strand, within GFF792 at 487.753 kb on - strand, within GFF792 at 487.753 kb on - strand, within GFF792 at 487.753 kb on - strand, within GFF792 at 487.753 kb on - strand, within GFF792 at 487.782 kb on + strand, within GFF792 at 487.783 kb on - strand, within GFF792 at 487.927 kb on - strand, within GFF792 at 488.007 kb on + strand, within GFF792 at 488.007 kb on + strand, within GFF792 at 488.008 kb on - strand, within GFF792 at 488.154 kb on + strand, within GFF792 at 488.179 kb on - strand, within GFF792 at 488.251 kb on - strand, within GFF792 at 488.777 kb on + strand, within GFF793 at 488.786 kb on + strand, within GFF793 at 488.786 kb on + strand, within GFF793 at 488.786 kb on + strand, within GFF793 at 488.786 kb on + strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 488.787 kb on - strand, within GFF793 at 489.899 kb on + strand, within GFF794 at 489.900 kb on - strand, within GFF794 at 489.902 kb on + strand, within GFF794 at 489.903 kb on - strand, within GFF794 at 490.184 kb on + strand, within GFF794 at 490.193 kb on + strand, within GFF794
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 487,414 + -0.3 487,437 + -0.2 487,437 + +1.2 487,438 - +0.5 487,438 - -0.5 487,438 - +0.0 487,603 - GFF792 0.18 -0.3 487,668 + GFF792 0.25 -0.8 487,668 + GFF792 0.25 +0.3 487,668 + GFF792 0.25 +0.2 487,668 + GFF792 0.25 +1.2 487,668 + GFF792 0.25 +0.1 487,668 + GFF792 0.25 -0.8 487,668 + GFF792 0.25 +0.5 487,669 - GFF792 0.26 -0.1 487,740 + GFF792 0.33 -0.6 487,741 - GFF792 0.33 -0.4 487,741 - GFF792 0.33 +0.1 487,752 + GFF792 0.35 +0.2 487,752 + GFF792 0.35 +0.1 487,752 + GFF792 0.35 +0.1 487,753 - GFF792 0.35 -0.2 487,753 - GFF792 0.35 -0.6 487,753 - GFF792 0.35 +0.8 487,753 - GFF792 0.35 -0.2 487,782 + GFF792 0.38 +0.1 487,783 - GFF792 0.38 -0.2 487,927 - GFF792 0.54 -1.3 488,007 + GFF792 0.63 -0.1 488,007 + GFF792 0.63 +0.1 488,008 - GFF792 0.63 -0.0 488,154 + GFF792 0.79 -0.2 488,179 - GFF792 0.81 -0.0 488,251 - GFF792 0.89 -0.2 488,777 + GFF793 0.43 -0.7 488,786 + GFF793 0.44 -1.5 488,786 + GFF793 0.44 +0.3 488,786 + GFF793 0.44 +0.1 488,786 + GFF793 0.44 +0.4 488,787 - GFF793 0.44 -0.0 488,787 - GFF793 0.44 +2.1 488,787 - GFF793 0.44 -0.5 488,787 - GFF793 0.44 -0.9 488,787 - GFF793 0.44 +0.5 488,787 - GFF793 0.44 -0.0 489,899 + GFF794 0.42 +0.5 489,900 - GFF794 0.42 -2.3 489,902 + GFF794 0.42 -0.1 489,903 - GFF794 0.42 -0.5 490,184 + GFF794 0.64 -0.2 490,193 + GFF794 0.64 +0.2
Or see this region's nucleotide sequence