Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF792

Experiment: Ying_OrganicAcid7 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF791 and GFF792 are separated by 5 nucleotidesGFF792 and GFF793 are separated by 8 nucleotides GFF791 - Aldose 1-epimerase (EC 5.1.3.3), at 486,372 to 487,430 GFF791 GFF792 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41), at 487,436 to 488,347 GFF792 GFF793 - Tricarboxylate transport protein TctC, at 488,356 to 489,327 GFF793 Position (kb) 487 488 489Strain fitness (log2 ratio) -1 0 1 2at 486.568 kb on + strand, within GFF791at 486.568 kb on + strand, within GFF791at 486.568 kb on + strand, within GFF791at 486.569 kb on - strand, within GFF791at 486.679 kb on + strand, within GFF791at 486.679 kb on + strand, within GFF791at 486.679 kb on + strand, within GFF791at 486.679 kb on + strand, within GFF791at 486.679 kb on + strand, within GFF791at 486.679 kb on + strand, within GFF791at 486.680 kb on - strand, within GFF791at 486.680 kb on - strand, within GFF791at 486.680 kb on - strand, within GFF791at 486.680 kb on - strand, within GFF791at 486.680 kb on - strand, within GFF791at 486.680 kb on - strand, within GFF791at 486.680 kb on - strand, within GFF791at 486.872 kb on - strand, within GFF791at 486.962 kb on - strand, within GFF791at 487.238 kb on - strand, within GFF791at 487.414 kb on + strandat 487.437 kb on + strandat 487.437 kb on + strandat 487.438 kb on - strandat 487.438 kb on - strandat 487.438 kb on - strandat 487.603 kb on - strand, within GFF792at 487.668 kb on + strand, within GFF792at 487.668 kb on + strand, within GFF792at 487.668 kb on + strand, within GFF792at 487.668 kb on + strand, within GFF792at 487.668 kb on + strand, within GFF792at 487.668 kb on + strand, within GFF792at 487.668 kb on + strand, within GFF792at 487.669 kb on - strand, within GFF792at 487.740 kb on + strand, within GFF792at 487.741 kb on - strand, within GFF792at 487.741 kb on - strand, within GFF792at 487.752 kb on + strand, within GFF792at 487.752 kb on + strand, within GFF792at 487.752 kb on + strand, within GFF792at 487.753 kb on - strand, within GFF792at 487.753 kb on - strand, within GFF792at 487.753 kb on - strand, within GFF792at 487.753 kb on - strand, within GFF792at 487.782 kb on + strand, within GFF792at 487.783 kb on - strand, within GFF792at 487.927 kb on - strand, within GFF792at 488.007 kb on + strand, within GFF792at 488.007 kb on + strand, within GFF792at 488.008 kb on - strand, within GFF792at 488.154 kb on + strand, within GFF792at 488.179 kb on - strand, within GFF792at 488.251 kb on - strand, within GFF792at 488.777 kb on + strand, within GFF793at 488.786 kb on + strand, within GFF793at 488.786 kb on + strand, within GFF793at 488.786 kb on + strand, within GFF793at 488.786 kb on + strand, within GFF793at 488.787 kb on - strand, within GFF793at 488.787 kb on - strand, within GFF793at 488.787 kb on - strand, within GFF793at 488.787 kb on - strand, within GFF793at 488.787 kb on - strand, within GFF793at 488.787 kb on - strand, within GFF793

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
remove
486,568 + GFF791 0.19 -0.1
486,568 + GFF791 0.19 -0.1
486,568 + GFF791 0.19 -0.3
486,569 - GFF791 0.19 -0.6
486,679 + GFF791 0.29 +0.4
486,679 + GFF791 0.29 +0.0
486,679 + GFF791 0.29 -0.3
486,679 + GFF791 0.29 +0.5
486,679 + GFF791 0.29 +0.7
486,679 + GFF791 0.29 +0.5
486,680 - GFF791 0.29 -1.1
486,680 - GFF791 0.29 +0.5
486,680 - GFF791 0.29 +0.0
486,680 - GFF791 0.29 -1.3
486,680 - GFF791 0.29 +0.3
486,680 - GFF791 0.29 -0.0
486,680 - GFF791 0.29 -0.5
486,872 - GFF791 0.47 +0.5
486,962 - GFF791 0.56 +0.7
487,238 - GFF791 0.82 -0.4
487,414 + -0.3
487,437 + -0.2
487,437 + +1.2
487,438 - +0.5
487,438 - -0.5
487,438 - +0.0
487,603 - GFF792 0.18 -0.3
487,668 + GFF792 0.25 -0.8
487,668 + GFF792 0.25 +0.3
487,668 + GFF792 0.25 +0.2
487,668 + GFF792 0.25 +1.2
487,668 + GFF792 0.25 +0.1
487,668 + GFF792 0.25 -0.8
487,668 + GFF792 0.25 +0.5
487,669 - GFF792 0.26 -0.1
487,740 + GFF792 0.33 -0.6
487,741 - GFF792 0.33 -0.4
487,741 - GFF792 0.33 +0.1
487,752 + GFF792 0.35 +0.2
487,752 + GFF792 0.35 +0.1
487,752 + GFF792 0.35 +0.1
487,753 - GFF792 0.35 -0.2
487,753 - GFF792 0.35 -0.6
487,753 - GFF792 0.35 +0.8
487,753 - GFF792 0.35 -0.2
487,782 + GFF792 0.38 +0.1
487,783 - GFF792 0.38 -0.2
487,927 - GFF792 0.54 -1.3
488,007 + GFF792 0.63 -0.1
488,007 + GFF792 0.63 +0.1
488,008 - GFF792 0.63 -0.0
488,154 + GFF792 0.79 -0.2
488,179 - GFF792 0.81 -0.0
488,251 - GFF792 0.89 -0.2
488,777 + GFF793 0.43 -0.7
488,786 + GFF793 0.44 -1.5
488,786 + GFF793 0.44 +0.3
488,786 + GFF793 0.44 +0.1
488,786 + GFF793 0.44 +0.4
488,787 - GFF793 0.44 -0.0
488,787 - GFF793 0.44 +2.1
488,787 - GFF793 0.44 -0.5
488,787 - GFF793 0.44 -0.9
488,787 - GFF793 0.44 +0.5
488,787 - GFF793 0.44 -0.0

Or see this region's nucleotide sequence