Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5742

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
2,768,331	+				-0.2
2,768,332	-				+1.0
2,768,332	-				+0.2
2,768,356	-				-0.2
2,768,433	+		GFF5741	0.10	-0.5
2,768,434	-		GFF5741	0.10	-0.2
2,768,434	-		GFF5741	0.10	+0.2
2,768,435	-		GFF5741	0.11	-0.4
2,768,574	+		GFF5741	0.37	-2.1
2,768,574	+		GFF5741	0.37	-0.1
2,768,574	+		GFF5741	0.37	+0.2
2,768,574	+		GFF5741	0.37	+0.0
2,768,574	+		GFF5741	0.37	-1.4
2,768,575	-		GFF5741	0.37	-0.1
2,768,575	-		GFF5741	0.37	+0.7
2,768,575	-		GFF5741	0.37	-0.4
2,768,575	-		GFF5741	0.37	-0.6
2,768,575	-		GFF5741	0.37	-0.2
2,768,581	-		GFF5741	0.38	+0.1
2,768,637	+		GFF5741	0.49	-0.3
2,768,637	+		GFF5741	0.49	+0.2
2,768,637	+		GFF5741	0.49	-0.4
2,768,637	+		GFF5741	0.49	+0.0
2,768,637	+		GFF5741	0.49	-0.4
2,768,637	+		GFF5741	0.49	-0.5
2,768,637	+		GFF5741	0.49	+1.0
2,768,638	-		GFF5741	0.49	+0.1
2,768,638	-		GFF5741	0.49	-0.3
2,768,638	-		GFF5741	0.49	-0.5
2,768,638	-		GFF5741	0.49	+0.3
2,768,638	-		GFF5741	0.49	-0.7
2,768,638	-		GFF5741	0.49	+0.9
2,768,984	+		GFF5742	0.16	-2.6
2,768,985	-		GFF5742	0.16	-1.0
2,768,985	-		GFF5742	0.16	-1.1
2,769,471	+		GFF5743	0.11	+0.5
2,769,471	+		GFF5743	0.11	-0.8
2,769,472	-		GFF5743	0.11	-0.1
2,769,472	-		GFF5743	0.11	+0.2
2,770,110	+		GFF5743	0.78	-0.1