Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5667 and GFF5668 overlap by 4 nucleotides GFF5668 and GFF5669 are separated by 2 nucleotides GFF5669 and GFF5670 are separated by 22 nucleotides GFF5670 and GFF5671 are separated by 5 nucleotides
GFF5667 - 6-hexanolactone hydrolase, at 2,691,497 to 2,692,399
GFF5667
GFF5668 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,692,396 to 2,693,145
GFF5668
GFF5669 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,693,148 to 2,693,984
GFF5669
GFF5670 - Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10), at 2,694,007 to 2,694,492
GFF5670
GFF5671 - putative dioxygenase hydroxylase component, at 2,694,498 to 2,695,790
GFF5671
Position (kb)
2693
2694 Strain fitness (log2 ratio)
-1
0
1 at 2692.188 kb on + strand, within GFF5667 at 2694.008 kb on + strand at 2694.030 kb on - strand at 2694.030 kb on - strand at 2694.108 kb on - strand, within GFF5670 at 2694.375 kb on - strand, within GFF5670 at 2694.447 kb on - strand at 2694.670 kb on + strand, within GFF5671 at 2694.670 kb on + strand, within GFF5671
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 2,692,188 + GFF5667 0.77 -0.6 2,694,008 + +0.8 2,694,030 - +0.3 2,694,030 - +0.4 2,694,108 - GFF5670 0.21 -0.7 2,694,375 - GFF5670 0.76 -0.5 2,694,447 - -0.6 2,694,670 + GFF5671 0.13 -0.1 2,694,670 + GFF5671 0.13 +0.1
Or see this region's nucleotide sequence