Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5628

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
2,646,361	+		GFF5626	0.84	-0.5
2,646,528	+				+0.7
2,646,985	-		GFF5627	0.77	-0.6
2,646,985	-		GFF5627	0.77	+0.6
2,646,985	-		GFF5627	0.77	+0.1
2,647,124	-				-0.6
2,647,124	-				-2.0
2,647,220	+				+0.1
2,647,220	+				+0.4
2,647,221	-				+0.5
2,647,822	-		GFF5628	0.60	+1.0
2,647,822	-		GFF5628	0.60	+0.1
2,648,259	-		GFF5629	0.12	-0.6
2,648,342	+		GFF5629	0.23	+0.3
2,648,343	-		GFF5629	0.23	+1.4
2,648,343	-		GFF5629	0.23	-0.4
2,648,609	+		GFF5629	0.60	-0.2
2,648,610	-		GFF5629	0.60	-0.2
2,648,673	-		GFF5629	0.69	+0.5
2,648,888	+				-0.4
2,648,888	+				-0.5
2,648,889	-				+0.1
2,648,889	-				+0.1