Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5599

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
2,616,721	-				-0.2
2,616,723	-				-1.1
2,616,723	-				-0.4
2,616,779	+				-0.1
2,616,780	-				-0.8
2,617,084	+		GFF5599	0.19	-0.1
2,617,084	+		GFF5599	0.19	+0.0
2,617,085	-		GFF5599	0.19	-0.2
2,617,085	-		GFF5599	0.19	-0.9
2,617,085	-		GFF5599	0.19	-0.5
2,617,085	-		GFF5599	0.19	+0.7
2,617,085	-		GFF5599	0.19	+0.3
2,617,172	+		GFF5599	0.28	+0.6
2,617,172	+		GFF5599	0.28	-0.5
2,617,172	+		GFF5599	0.28	+1.5
2,617,172	+		GFF5599	0.28	+0.7
2,617,172	+		GFF5599	0.28	+0.9
2,617,173	-		GFF5599	0.28	+0.1
2,617,173	-		GFF5599	0.28	-0.1
2,617,231	+		GFF5599	0.34	-0.2
2,617,231	+		GFF5599	0.34	-0.5
2,617,231	+		GFF5599	0.34	+0.3
2,617,232	-		GFF5599	0.34	-0.1
2,617,232	-		GFF5599	0.34	+0.2
2,617,232	-		GFF5599	0.34	+0.1
2,617,232	-		GFF5599	0.34	-0.1
2,617,288	+		GFF5599	0.40	+0.3
2,617,288	+		GFF5599	0.40	+0.2
2,617,651	+		GFF5599	0.77	+1.5
2,617,652	-		GFF5599	0.77	-1.1
2,617,652	-		GFF5599	0.77	-0.0
2,617,652	-		GFF5599	0.77	-0.1
2,617,652	-		GFF5599	0.77	-0.9
2,617,652	-		GFF5599	0.77	-0.1
2,617,652	-		GFF5599	0.77	-0.4
2,617,654	+		GFF5599	0.77	-0.6
2,617,654	+		GFF5599	0.77	-0.1
2,617,655	-		GFF5599	0.77	+0.0
2,617,655	-		GFF5599	0.77	-0.1
2,617,786	+				+0.1
2,617,828	+				-0.3
2,617,829	-				+0.9
2,617,829	-				+0.5
2,617,829	-				+0.1
2,617,898	+				-0.3
2,617,975	+				-0.6
2,618,085	-				-0.4
2,618,492	+		GFF5600	0.36	-0.3
2,618,493	-		GFF5600	0.36	-0.0
2,618,658	-		GFF5600	0.55	+0.3
2,618,727	-		GFF5600	0.63	-0.4