Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5206

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
2,220,339	-		GFF5204	0.61	+0.2
2,220,339	-		GFF5204	0.61	+0.1
2,220,339	-		GFF5204	0.61	-0.3
2,220,449	+		GFF5204	0.70	+0.1
2,220,449	+		GFF5204	0.70	+0.2
2,220,449	+		GFF5204	0.70	+0.0
2,220,449	+		GFF5204	0.70	+0.2
2,220,449	+		GFF5204	0.70	-0.3
2,220,450	-		GFF5204	0.70	-0.3
2,220,450	-		GFF5204	0.70	-0.9
2,220,450	-		GFF5204	0.70	+1.2
2,220,450	-		GFF5204	0.70	-0.0
2,220,569	+		GFF5204	0.80	-0.2
2,220,569	+		GFF5204	0.80	-0.2
2,220,569	+		GFF5204	0.80	+0.0
2,220,570	-		GFF5204	0.80	+0.6
2,220,570	-		GFF5204	0.80	-1.1
2,220,570	-		GFF5204	0.80	-0.0
2,220,966	+		GFF5205	0.22	+0.1
2,220,966	+		GFF5205	0.22	-0.5
2,220,966	+		GFF5205	0.22	+0.2
2,221,041	+		GFF5205	0.40	+0.6
2,221,041	+		GFF5205	0.40	-0.0
2,221,041	+		GFF5205	0.40	-0.7
2,221,041	+		GFF5205	0.40	-0.2
2,221,041	+		GFF5205	0.40	-0.4
2,221,041	+		GFF5205	0.40	-0.5
2,221,041	+		GFF5205	0.40	-0.0
2,221,042	-		GFF5205	0.40	-0.2
2,221,042	-		GFF5205	0.40	-0.2
2,221,042	-		GFF5205	0.40	-0.3
2,221,182	+		GFF5205	0.73	+0.8
2,221,191	+		GFF5205	0.75	-0.1
2,221,332	+				-0.1
2,221,332	+				-1.0
2,221,405	+		GFF5206	0.11	+0.8
2,221,405	+		GFF5206	0.11	+0.1
2,221,406	-		GFF5206	0.11	-0.1
2,221,406	-		GFF5206	0.11	-0.3
2,221,406	-		GFF5206	0.11	+0.3
2,221,967	-		GFF5206	0.73	+0.3
2,221,967	-		GFF5206	0.73	+0.2
2,221,970	-		GFF5206	0.74	+0.2
2,221,979	-		GFF5206	0.75	+1.0
2,222,254	+				+0.3
2,222,255	-				-0.1
2,222,255	-				-0.9
2,222,536	+		GFF5207	0.36	+0.1
2,222,536	+		GFF5207	0.36	-0.2
2,222,605	+		GFF5207	0.45	-0.1
2,222,605	+		GFF5207	0.45	-1.1
2,222,605	+		GFF5207	0.45	-0.3
2,222,605	+		GFF5207	0.45	+0.4
2,222,605	+		GFF5207	0.45	-0.2
2,222,605	+		GFF5207	0.45	-0.3
2,222,606	-		GFF5207	0.45	-0.2
2,223,028	+				+0.5
2,223,028	+				-0.1
2,223,028	+				-0.5
2,223,028	+				-0.4
2,223,029	-				-0.0
2,223,050	+				+0.3
2,223,051	-				-0.4
2,223,051	-				+0.2
2,223,051	-				-0.3
2,223,132	+				-0.1
2,223,133	-				-0.2
2,223,133	-				-0.3