Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4893

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
1,906,609	+		GFF4892	0.65	-2.3
1,906,609	+		GFF4892	0.65	-1.8
1,906,801	+		GFF4892	0.72	-2.9
1,906,801	+		GFF4892	0.72	-3.4
1,906,801	+		GFF4892	0.72	-3.2
1,906,801	+		GFF4892	0.72	-0.4
1,906,802	-		GFF4892	0.72	-3.0
1,906,802	-		GFF4892	0.72	-2.5
1,906,802	-		GFF4892	0.72	-4.2
1,906,802	-		GFF4892	0.72	-2.1
1,907,041	+		GFF4892	0.82	-1.2
1,907,041	+		GFF4892	0.82	-2.7
1,907,041	+		GFF4892	0.82	-2.6
1,907,041	+		GFF4892	0.82	-2.2
1,907,042	-		GFF4892	0.82	-0.3
1,907,042	-		GFF4892	0.82	-1.9
1,907,042	-		GFF4892	0.82	-2.0
1,907,042	-		GFF4892	0.82	-3.1
1,907,042	-		GFF4892	0.82	-0.8
1,907,042	-		GFF4892	0.82	-0.9
1,907,042	-		GFF4892	0.82	-1.9
1,907,216	-		GFF4892	0.89	-2.4
1,907,272	+				-3.3
1,907,272	+				-2.0
1,907,273	-				-1.7
1,907,284	+				+0.4
1,907,284	+				-1.3
1,907,284	+				-1.2
1,907,284	+				-1.4
1,907,284	+				-2.5
1,907,285	-				-0.9
1,907,285	-				-0.2
1,907,285	-				-2.7
1,907,285	-				-1.0
1,907,377	+				-1.9
1,907,377	+				-2.2
1,907,377	+				-1.6
1,907,377	+				-1.0
1,907,377	+				-3.7
1,907,377	+				-2.3
1,907,378	-				-1.2
1,907,378	-				-1.8
1,907,378	-				-1.2
1,907,378	-				-0.7
1,907,378	-				-1.5
1,907,378	-				-2.0
1,907,532	+				-2.3
1,907,532	+				-1.7
1,907,640	+		GFF4893	0.22	-1.7
1,907,641	-		GFF4893	0.22	-3.0
1,907,682	-		GFF4893	0.29	-3.4
1,909,080	-				-0.6
1,909,080	-				-0.2