Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF487 and GFF488 overlap by 4 nucleotides GFF488 and GFF489 are separated by 4 nucleotides
GFF487 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 152,980 to 156,111
GFF487
GFF488 - RND multidrug efflux transporter; Acriflavin resistance protein, at 156,108 to 159,239
GFF488
GFF489 - RND efflux system, outer membrane lipoprotein, NodT family, at 159,244 to 160,644
GFF489
Position (kb) 156
157
158
159
160 Strain fitness (log2 ratio) -1
0
1
2 at 155.338 kb on + strand, within GFF487 at 155.338 kb on + strand, within GFF487 at 155.338 kb on + strand, within GFF487 at 155.338 kb on + strand, within GFF487 at 155.339 kb on - strand, within GFF487 at 155.339 kb on - strand, within GFF487 at 155.339 kb on - strand, within GFF487 at 155.339 kb on - strand, within GFF487 at 155.641 kb on + strand, within GFF487 at 155.642 kb on - strand, within GFF487 at 155.642 kb on - strand, within GFF487 at 155.642 kb on - strand, within GFF487 at 155.642 kb on - strand, within GFF487 at 155.642 kb on - strand, within GFF487 at 155.662 kb on + strand, within GFF487 at 155.662 kb on + strand, within GFF487 at 155.662 kb on + strand, within GFF487 at 155.663 kb on - strand, within GFF487 at 156.433 kb on + strand, within GFF488 at 156.434 kb on - strand, within GFF488 at 156.495 kb on + strand, within GFF488 at 157.785 kb on + strand, within GFF488 at 157.785 kb on + strand, within GFF488 at 157.786 kb on - strand, within GFF488 at 157.786 kb on - strand, within GFF488 at 157.891 kb on + strand, within GFF488 at 158.139 kb on + strand, within GFF488 at 158.377 kb on - strand, within GFF488 at 158.377 kb on - strand, within GFF488 at 158.574 kb on + strand, within GFF488 at 158.575 kb on - strand, within GFF488 at 158.752 kb on - strand, within GFF488 at 158.772 kb on + strand, within GFF488 at 158.772 kb on + strand, within GFF488 at 159.325 kb on + strand at 159.626 kb on - strand, within GFF489 at 159.772 kb on + strand, within GFF489 at 159.772 kb on + strand, within GFF489 at 159.773 kb on - strand, within GFF489 at 159.832 kb on + strand, within GFF489 at 159.833 kb on - strand, within GFF489 at 159.866 kb on - strand, within GFF489 at 159.866 kb on - strand, within GFF489 at 159.866 kb on - strand, within GFF489 at 160.013 kb on - strand, within GFF489 at 160.013 kb on - strand, within GFF489
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 155,338 + GFF487 0.75 +1.5 155,338 + GFF487 0.75 -0.4 155,338 + GFF487 0.75 +0.6 155,338 + GFF487 0.75 -0.1 155,339 - GFF487 0.75 -1.3 155,339 - GFF487 0.75 -0.2 155,339 - GFF487 0.75 -1.1 155,339 - GFF487 0.75 +0.5 155,641 + GFF487 0.85 +0.6 155,642 - GFF487 0.85 +0.8 155,642 - GFF487 0.85 -0.7 155,642 - GFF487 0.85 -1.0 155,642 - GFF487 0.85 +0.7 155,642 - GFF487 0.85 +0.3 155,662 + GFF487 0.86 +0.6 155,662 + GFF487 0.86 +0.1 155,662 + GFF487 0.86 -0.4 155,663 - GFF487 0.86 +0.1 156,433 + GFF488 0.10 +0.7 156,434 - GFF488 0.10 -0.1 156,495 + GFF488 0.12 -1.7 157,785 + GFF488 0.54 +0.6 157,785 + GFF488 0.54 -0.0 157,786 - GFF488 0.54 -0.1 157,786 - GFF488 0.54 +0.1 157,891 + GFF488 0.57 +2.3 158,139 + GFF488 0.65 -0.1 158,377 - GFF488 0.72 +1.0 158,377 - GFF488 0.72 +0.6 158,574 + GFF488 0.79 -0.6 158,575 - GFF488 0.79 -0.6 158,752 - GFF488 0.84 -0.7 158,772 + GFF488 0.85 +0.1 158,772 + GFF488 0.85 -0.1 159,325 + +0.6 159,626 - GFF489 0.27 -0.1 159,772 + GFF489 0.38 -0.4 159,772 + GFF489 0.38 +0.1 159,773 - GFF489 0.38 +0.2 159,832 + GFF489 0.42 +0.4 159,833 - GFF489 0.42 +0.3 159,866 - GFF489 0.44 +0.8 159,866 - GFF489 0.44 -0.3 159,866 - GFF489 0.44 +0.3 160,013 - GFF489 0.55 -1.4 160,013 - GFF489 0.55 -0.3
Or see this region's nucleotide sequence