Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4733

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
1,686,325	+		GFF4732	0.65	-0.3
1,686,325	+		GFF4732	0.65	+1.2
1,686,325	+		GFF4732	0.65	-1.2
1,686,325	+		GFF4732	0.65	-0.5
1,686,325	+		GFF4732	0.65	+1.1
1,686,325	+		GFF4732	0.65	-1.4
1,686,326	-		GFF4732	0.65	+0.7
1,686,326	-		GFF4732	0.65	-0.7
1,686,326	-		GFF4732	0.65	+1.4
1,686,575	+		GFF4732	0.83	-0.3
1,686,575	+		GFF4732	0.83	+0.4
1,686,576	-		GFF4732	0.83	-0.2
1,686,576	-		GFF4732	0.83	-0.9
1,686,576	-		GFF4732	0.83	+0.4
1,686,576	-		GFF4732	0.83	+0.6
1,686,576	-		GFF4732	0.83	-0.4
1,686,657	+		GFF4732	0.89	-0.4
1,686,657	+		GFF4732	0.89	-0.9
1,686,657	+		GFF4732	0.89	+0.2
1,686,657	+		GFF4732	0.89	-1.2
1,686,657	+		GFF4732	0.89	-0.1
1,686,657	+		GFF4732	0.89	-0.1
1,686,658	-		GFF4732	0.89	+0.5
1,686,658	-		GFF4732	0.89	+0.2
1,686,690	+				-0.3
1,686,691	-				-0.1
1,686,709	-				+0.4
1,686,709	-				-0.0
1,686,709	-				+0.4
1,686,858	-				-0.1
1,686,858	-				+0.1
1,686,858	-				-0.0
1,686,858	-				+0.4
1,686,890	+				+0.2
1,686,891	-				-0.5
1,686,891	-				+0.1
1,686,898	+				-0.8
1,686,898	+				+0.4
1,686,899	-				-0.2
1,686,899	-				+0.7
1,687,087	+				-0.6
1,687,088	-				+0.4
1,687,088	-				+1.4
1,687,201	+				+0.5
1,687,201	+				-0.4
1,687,201	+				-0.3
1,687,201	+				-0.2
1,687,202	-				-0.0
1,687,202	-				+0.6
1,687,202	-				-0.3
1,687,202	-				-0.1
1,687,202	-				-0.0
1,687,202	-				-0.1
1,687,202	-				-0.6
1,687,847	+		GFF4733	0.28	+0.5
1,687,959	-		GFF4733	0.33	+1.0
1,687,959	-		GFF4733	0.33	+0.1
1,688,040	-		GFF4733	0.37	-0.5
1,688,040	-		GFF4733	0.37	-0.1
1,688,180	+		GFF4733	0.43	+0.3
1,688,180	+		GFF4733	0.43	+0.3
1,688,180	+		GFF4733	0.43	+0.4
1,688,180	+		GFF4733	0.43	-0.1
1,688,180	+		GFF4733	0.43	-0.1
1,688,181	-		GFF4733	0.43	-0.6
1,688,181	-		GFF4733	0.43	+0.0
1,688,181	-		GFF4733	0.43	-0.1
1,688,183	+		GFF4733	0.43	-0.5
1,688,183	+		GFF4733	0.43	-0.1
1,688,183	+		GFF4733	0.43	-1.3
1,688,184	-		GFF4733	0.43	-0.9
1,688,184	-		GFF4733	0.43	+0.1
1,688,184	-		GFF4733	0.43	-0.1
1,688,219	-		GFF4733	0.45	+0.1
1,688,259	-		GFF4733	0.47	-0.5
1,688,259	-		GFF4733	0.47	-0.5
1,688,288	+		GFF4733	0.48	+1.2
1,688,288	+		GFF4733	0.48	-0.4
1,688,450	+		GFF4733	0.55	-0.2
1,688,450	+		GFF4733	0.55	-0.9
1,688,639	+		GFF4733	0.64	-0.1
1,688,640	-		GFF4733	0.64	-0.2
1,688,640	-		GFF4733	0.64	-0.0
1,688,676	-		GFF4733	0.65	-0.4
1,688,676	-		GFF4733	0.65	-1.0
1,688,676	-		GFF4733	0.65	-0.7
1,688,684	+		GFF4733	0.66	+0.1
1,688,684	+		GFF4733	0.66	-0.8
1,688,684	+		GFF4733	0.66	+0.2
1,688,685	-		GFF4733	0.66	-0.4
1,688,685	-		GFF4733	0.66	-0.1
1,688,685	-		GFF4733	0.66	-0.4
1,688,709	-		GFF4733	0.67	-0.5
1,688,709	-		GFF4733	0.67	+1.4
1,688,709	-		GFF4733	0.67	+0.2
1,688,762	+		GFF4733	0.69	-0.2
1,688,762	+		GFF4733	0.69	+0.4
1,688,762	+		GFF4733	0.69	-0.7
1,688,763	+		GFF4733	0.69	+0.4
1,688,763	-		GFF4733	0.69	-0.2
1,688,763	-		GFF4733	0.69	-0.9
1,688,763	-		GFF4733	0.69	+0.4
1,688,763	-		GFF4733	0.69	+0.1
1,688,765	+		GFF4733	0.69	-1.4
1,688,765	+		GFF4733	0.69	-0.7
1,688,766	-		GFF4733	0.69	-0.2
1,688,793	-		GFF4733	0.71	+0.1
1,688,793	-		GFF4733	0.71	+1.4
1,688,793	-		GFF4733	0.71	-1.4
1,688,793	-		GFF4733	0.71	-0.9
1,688,793	-		GFF4733	0.71	-0.9
1,688,882	+		GFF4733	0.75	+0.3
1,688,882	+		GFF4733	0.75	-0.6
1,688,918	+		GFF4733	0.76	-0.1
1,688,918	+		GFF4733	0.76	-0.6
1,688,918	+		GFF4733	0.76	-0.2
1,688,919	-		GFF4733	0.76	+0.4
1,688,919	-		GFF4733	0.76	-0.8
1,688,919	-		GFF4733	0.76	+0.3
1,688,919	-		GFF4733	0.76	+0.4
1,688,919	-		GFF4733	0.76	+0.3
1,688,919	-		GFF4733	0.76	-0.4
1,688,930	+		GFF4733	0.77	+0.1
1,688,930	+		GFF4733	0.77	-0.3
1,688,931	-		GFF4733	0.77	+0.1
1,688,931	-		GFF4733	0.77	-1.0
1,689,161	+		GFF4733	0.87	-0.1
1,689,230	+				-0.6
1,689,230	+				+0.3
1,689,302	+				-0.1
1,689,302	+				-0.6
1,689,311	+				+0.6
1,689,371	+				-0.4
1,689,828	+				-0.0
1,690,059	-				-0.5
1,690,125	+				-0.2
1,690,125	+				-0.1
1,690,345	+				+0.0
1,690,345	+				-0.3
1,690,345	+				-0.6
1,690,345	+				+0.2
1,690,345	+				+0.0
1,690,346	-				-0.6
1,690,346	-				+0.5
1,690,346	-				-0.4
1,690,346	-				+0.1
1,690,346	-				+0.2
1,690,346	-				+1.4
1,690,384	+				-0.1
1,690,385	-				+0.2