Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4628

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
1,577,416	+		GFF4626	0.73	+0.5
1,577,417	-		GFF4626	0.74	+0.1
1,577,417	-		GFF4626	0.74	-0.4
1,577,462	-		GFF4626	0.76	+0.6
1,577,462	-		GFF4626	0.76	+0.3
1,577,659	+		GFF4626	0.86	-0.2
1,577,659	+		GFF4626	0.86	+0.4
1,577,659	+		GFF4626	0.86	+0.3
1,577,660	-		GFF4626	0.86	+1.0
1,577,660	-		GFF4626	0.86	-0.4
1,577,766	+				-0.1
1,577,768	-				+0.3
1,577,768	-				+0.1
1,577,845	+				-0.1
1,578,074	+		GFF4627	0.64	+0.8
1,578,105	-		GFF4627	0.75	-0.0
1,578,163	+				+0.4
1,578,163	+				+0.7
1,578,163	+				-1.2
1,578,164	-				-0.1
1,578,238	+				+0.2
1,578,238	+				-0.2
1,578,239	-				-0.8
1,578,273	-				-0.2
1,578,295	+				+0.2
1,578,296	-				+0.1
1,578,327	+				-0.3
1,578,327	+				-1.0
1,578,327	+				+0.6
1,578,328	-				-0.1
1,578,328	-				+0.7
1,578,333	-				-0.5
1,578,619	+		GFF4628	0.16	-0.2
1,578,885	+		GFF4628	0.28	+0.1
1,578,886	-		GFF4628	0.28	+0.2
1,578,894	+		GFF4628	0.29	-0.2
1,578,919	+		GFF4628	0.30	-0.4
1,578,920	-		GFF4628	0.30	-0.2
1,578,920	-		GFF4628	0.30	+1.1
1,578,929	+		GFF4628	0.30	-0.0
1,578,963	+		GFF4628	0.32	-0.4
1,579,273	+		GFF4628	0.46	-0.5
1,579,294	-		GFF4628	0.47	+0.1
1,579,356	+		GFF4628	0.50	-0.1
1,579,357	-		GFF4628	0.50	-0.3
1,579,357	-		GFF4628	0.50	-0.3
1,579,386	+		GFF4628	0.52	-0.3
1,579,387	-		GFF4628	0.52	-0.1
1,579,387	-		GFF4628	0.52	+0.1
1,579,387	-		GFF4628	0.52	+0.2
1,579,387	-		GFF4628	0.52	-0.5
1,579,387	-		GFF4628	0.52	+0.2
1,579,387	-		GFF4628	0.52	+0.1
1,579,387	-		GFF4628	0.52	+0.1
1,579,392	+		GFF4628	0.52	+1.0
1,579,392	+		GFF4628	0.52	-0.0
1,579,392	+		GFF4628	0.52	-1.6
1,579,392	+		GFF4628	0.52	-0.4
1,579,392	+		GFF4628	0.52	+0.9
1,579,393	-		GFF4628	0.52	-0.3
1,579,393	-		GFF4628	0.52	-0.1
1,579,393	-		GFF4628	0.52	-0.6
1,579,396	+		GFF4628	0.52	-0.6
1,579,396	+		GFF4628	0.52	+0.9
1,579,590	+		GFF4628	0.61	-0.3
1,579,590	+		GFF4628	0.61	-0.8
1,579,591	-		GFF4628	0.61	+1.0
1,579,686	+		GFF4628	0.66	-0.7
1,579,687	-		GFF4628	0.66	-2.6
1,579,687	-		GFF4628	0.66	-0.1
1,580,098	+		GFF4628	0.85	+1.2
1,580,099	-		GFF4628	0.85	-1.0
1,580,157	+		GFF4628	0.88	-0.1
1,580,157	+		GFF4628	0.88	+0.7
1,580,157	+		GFF4628	0.88	+0.8
1,580,157	+		GFF4628	0.88	-0.2
1,580,158	-		GFF4628	0.88	-1.2
1,580,158	-		GFF4628	0.88	+0.5
1,580,158	-		GFF4628	0.88	+0.2
1,580,176	+		GFF4628	0.88	+0.3
1,580,176	+		GFF4628	0.88	-0.2
1,580,177	-		GFF4628	0.89	-1.6
1,580,177	-		GFF4628	0.89	-0.0
1,580,177	-		GFF4628	0.89	-0.5
1,580,177	-		GFF4628	0.89	+0.2
1,580,177	-		GFF4628	0.89	-0.3
1,580,182	+		GFF4628	0.89	+1.5
1,580,183	-		GFF4628	0.89	-0.5
1,580,446	+		GFF4629	0.35	+0.6
1,580,447	-		GFF4629	0.36	+0.5
1,580,447	-		GFF4629	0.36	-0.1
1,580,526	+		GFF4629	0.70	-0.9
1,580,526	+		GFF4629	0.70	-0.1
1,580,526	+		GFF4629	0.70	+0.2
1,580,527	-		GFF4629	0.71	-0.6
1,580,527	-		GFF4629	0.71	-0.3
1,580,535	+		GFF4629	0.74	-0.6
1,580,535	+		GFF4629	0.74	-1.8
1,580,536	-		GFF4629	0.75	+0.6
1,580,536	-		GFF4629	0.75	-0.6
1,580,536	-		GFF4629	0.75	-0.6
1,580,536	-		GFF4629	0.75	-0.2
1,580,575	+				-0.6
1,580,575	+				+0.5
1,580,576	-				+0.2
1,580,581	+				+0.0
1,580,581	+				-0.2
1,580,581	+				-0.3
1,580,581	+				-0.3
1,580,581	+				-0.4
1,580,581	+				-0.9
1,580,581	+				+0.1
1,580,582	-				+0.3
1,580,582	-				+0.2
1,580,582	-				-0.3
1,580,582	-				+0.2
1,580,582	-				-1.1
1,580,582	-				-1.0
1,580,582	-				-0.2
1,580,592	-				+0.9
1,580,592	-				+0.1
1,580,614	+				-0.4
1,580,672	+				-0.3
1,580,716	+				-1.0
1,580,732	+				-0.3
1,580,732	+				+1.7
1,580,733	-				+1.5
1,580,733	-				-0.8
1,580,733	-				-1.2
1,580,750	+				-1.4
1,580,751	-				+0.8
1,580,751	-				+0.6
1,580,751	-				-0.2
1,580,751	-				-2.1
1,580,774	+				+0.5
1,580,774	+				-0.2
1,580,774	+				+0.4
1,580,774	+				+0.5
1,580,774	+				-1.3
1,580,775	-				-0.3
1,580,775	-				-0.4
1,580,783	+				-0.6
1,580,784	-				-0.3
1,580,784	-				+0.2
1,580,784	-				+0.2
1,580,784	-				-0.7
1,580,784	-				-0.1
1,580,787	+				-0.3
1,580,787	+				+0.2
1,580,852	+				-0.0
1,580,852	+				-0.6
1,580,866	+				+0.9
1,580,866	+				-0.5
1,581,072	-				-0.5
1,581,083	+				+0.0
1,581,111	+				-0.0
1,581,111	+				-0.1
1,581,119	+				-0.8
1,581,119	+				+0.0
1,581,134	+				-0.1
1,581,135	-				-0.7
1,581,175	-				-0.5
1,581,195	+				-0.0
1,581,210	+				-0.9
1,581,268	+				-0.1
1,581,268	+				+0.3
1,581,269	-				-1.2
1,581,269	-				-1.1
1,581,269	-				-1.0
1,581,269	-				-0.4
1,581,276	+				+0.0
1,581,335	+				+0.4
1,581,378	+				+0.4
1,581,379	-				-0.3
1,581,379	-				+0.5
1,581,379	-				+0.6
1,581,379	-				+0.3