Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4026 and GFF4027 are separated by 12 nucleotides GFF4027 and GFF4028 are separated by 72 nucleotides GFF4028 and GFF4029 are separated by 6 nucleotides GFF4029 and GFF4030 are separated by 13 nucleotides
GFF4026 - Cytosine deaminase (EC 3.5.4.1), at 941,070 to 941,510
GFF4026
GFF4027 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 941,523 to 942,251
GFF4027
GFF4028 - hypothetical protein, at 942,324 to 942,458
GFF4028
GFF4029 - Aerotaxis sensor receptor protein, at 942,465 to 944,009
GFF4029
GFF4030 - sensory box histidine kinase, at 944,023 to 945,633
GFF4030
Position (kb) 942
943
944
945 Strain fitness (log2 ratio) -1
0
1 at 941.936 kb on - strand, within GFF4027 at 942.044 kb on - strand, within GFF4027 at 942.369 kb on + strand, within GFF4028 at 942.370 kb on - strand, within GFF4028 at 942.795 kb on + strand, within GFF4029 at 942.852 kb on + strand, within GFF4029 at 942.852 kb on + strand, within GFF4029 at 944.389 kb on + strand, within GFF4030 at 944.390 kb on - strand, within GFF4030 at 944.390 kb on - strand, within GFF4030 at 944.390 kb on - strand, within GFF4030 at 944.390 kb on - strand, within GFF4030 at 944.450 kb on + strand, within GFF4030 at 944.450 kb on + strand, within GFF4030 at 944.450 kb on + strand, within GFF4030 at 944.451 kb on - strand, within GFF4030 at 944.451 kb on - strand, within GFF4030 at 944.545 kb on + strand, within GFF4030 at 944.546 kb on - strand, within GFF4030 at 944.803 kb on + strand, within GFF4030 at 944.803 kb on + strand, within GFF4030 at 944.803 kb on - strand, within GFF4030 at 944.804 kb on - strand, within GFF4030 at 944.890 kb on + strand, within GFF4030 at 944.891 kb on - strand, within GFF4030 at 944.915 kb on - strand, within GFF4030
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 941,936 - GFF4027 0.57 +0.1 942,044 - GFF4027 0.71 -0.1 942,369 + GFF4028 0.33 +0.7 942,370 - GFF4028 0.34 +0.3 942,795 + GFF4029 0.21 +0.5 942,852 + GFF4029 0.25 +0.4 942,852 + GFF4029 0.25 +0.1 944,389 + GFF4030 0.23 -0.2 944,390 - GFF4030 0.23 +0.1 944,390 - GFF4030 0.23 +1.4 944,390 - GFF4030 0.23 +0.2 944,390 - GFF4030 0.23 +0.9 944,450 + GFF4030 0.27 +0.0 944,450 + GFF4030 0.27 +0.3 944,450 + GFF4030 0.27 +1.0 944,451 - GFF4030 0.27 +0.1 944,451 - GFF4030 0.27 +1.6 944,545 + GFF4030 0.32 +0.5 944,546 - GFF4030 0.32 +0.2 944,803 + GFF4030 0.48 +0.4 944,803 + GFF4030 0.48 +0.4 944,803 - GFF4030 0.48 -0.5 944,804 - GFF4030 0.48 -0.7 944,890 + GFF4030 0.54 -0.4 944,891 - GFF4030 0.54 +0.0 944,915 - GFF4030 0.55 +1.1
Or see this region's nucleotide sequence