Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3786 and GFF3787 are separated by 3 nucleotides GFF3787 and GFF3788 are separated by 170 nucleotides
GFF3786 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 684,957 to 686,795
GFF3786
GFF3787 - 2-hydroxychromene-2-carboxylate isomerase, at 686,799 to 687,428
GFF3787
GFF3788 - TRAP transporter solute receptor, unknown substrate 3, at 687,599 to 688,639
GFF3788
Position (kb) 686
687
688 Strain fitness (log2 ratio) -1
0
1 at 685.801 kb on - strand, within GFF3786 at 685.914 kb on + strand, within GFF3786 at 685.915 kb on - strand, within GFF3786 at 686.080 kb on - strand, within GFF3786 at 686.080 kb on - strand, within GFF3786 at 686.193 kb on + strand, within GFF3786 at 686.506 kb on - strand, within GFF3786 at 686.506 kb on - strand, within GFF3786 at 686.506 kb on - strand, within GFF3786 at 686.506 kb on - strand, within GFF3786 at 687.052 kb on + strand, within GFF3787 at 687.061 kb on + strand, within GFF3787 at 687.061 kb on + strand, within GFF3787 at 687.220 kb on + strand, within GFF3787 at 687.221 kb on - strand, within GFF3787 at 687.221 kb on - strand, within GFF3787 at 687.221 kb on - strand, within GFF3787 at 687.358 kb on + strand, within GFF3787 at 687.410 kb on + strand at 687.410 kb on + strand at 687.411 kb on - strand at 687.416 kb on + strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.434 kb on + strand at 687.441 kb on + strand at 687.441 kb on + strand at 687.442 kb on - strand at 687.442 kb on - strand at 687.897 kb on - strand, within GFF3788 at 688.353 kb on - strand, within GFF3788
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 685,801 - GFF3786 0.46 +0.6 685,914 + GFF3786 0.52 +0.2 685,915 - GFF3786 0.52 -0.1 686,080 - GFF3786 0.61 +0.3 686,080 - GFF3786 0.61 +0.3 686,193 + GFF3786 0.67 -0.7 686,506 - GFF3786 0.84 -0.0 686,506 - GFF3786 0.84 -0.3 686,506 - GFF3786 0.84 -0.4 686,506 - GFF3786 0.84 -0.4 687,052 + GFF3787 0.40 +0.4 687,061 + GFF3787 0.42 -0.4 687,061 + GFF3787 0.42 -1.1 687,220 + GFF3787 0.67 +0.1 687,221 - GFF3787 0.67 +0.1 687,221 - GFF3787 0.67 +1.2 687,221 - GFF3787 0.67 +0.5 687,358 + GFF3787 0.89 +0.3 687,410 + +0.1 687,410 + +0.5 687,411 - +0.1 687,416 + +0.2 687,417 - +0.5 687,417 - +0.0 687,434 + +0.7 687,441 + +0.2 687,441 + +0.3 687,442 - +0.0 687,442 - -0.0 687,897 - GFF3788 0.29 -0.7 688,353 - GFF3788 0.72 -0.2
Or see this region's nucleotide sequence