Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3707 and GFF3708 are separated by 10 nucleotides GFF3708 and GFF3709 overlap by 4 nucleotides GFF3709 and GFF3710 are separated by 159 nucleotides
GFF3707 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 599,617 to 600,645
GFF3707
GFF3708 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 600,656 to 601,624
GFF3708
GFF3709 - Transcriptional regulator, MarR family, at 601,621 to 602,163
GFF3709
GFF3710 - Tricarboxylate transport protein TctC, at 602,323 to 603,381
GFF3710
Position (kb) 601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2 at 600.822 kb on - strand, within GFF3708 at 600.858 kb on - strand, within GFF3708 at 600.858 kb on - strand, within GFF3708 at 601.082 kb on + strand, within GFF3708 at 601.083 kb on - strand, within GFF3708 at 601.232 kb on + strand, within GFF3708 at 601.232 kb on + strand, within GFF3708 at 601.232 kb on + strand, within GFF3708 at 601.233 kb on - strand, within GFF3708 at 601.233 kb on - strand, within GFF3708 at 601.235 kb on + strand, within GFF3708 at 601.235 kb on + strand, within GFF3708 at 601.235 kb on + strand, within GFF3708 at 601.235 kb on + strand, within GFF3708 at 601.235 kb on + strand, within GFF3708 at 601.236 kb on - strand, within GFF3708 at 601.236 kb on - strand, within GFF3708 at 601.236 kb on - strand, within GFF3708 at 601.236 kb on - strand, within GFF3708 at 601.622 kb on + strand at 601.622 kb on + strand at 601.622 kb on + strand at 601.622 kb on + strand at 601.622 kb on + strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.688 kb on + strand, within GFF3709 at 601.688 kb on + strand, within GFF3709 at 601.688 kb on + strand, within GFF3709 at 601.688 kb on + strand, within GFF3709 at 601.688 kb on + strand, within GFF3709 at 601.688 kb on + strand, within GFF3709 at 601.688 kb on + strand, within GFF3709 at 601.689 kb on - strand, within GFF3709 at 601.689 kb on - strand, within GFF3709 at 602.242 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.283 kb on + strand at 602.284 kb on - strand at 602.284 kb on - strand at 602.284 kb on - strand at 602.284 kb on - strand at 602.515 kb on + strand, within GFF3710 at 602.638 kb on + strand, within GFF3710 at 602.638 kb on + strand, within GFF3710 at 602.638 kb on + strand, within GFF3710 at 602.638 kb on + strand, within GFF3710 at 602.639 kb on - strand, within GFF3710 at 602.639 kb on - strand, within GFF3710 at 602.639 kb on - strand, within GFF3710 at 602.639 kb on - strand, within GFF3710 at 602.639 kb on - strand, within GFF3710 at 602.666 kb on - strand, within GFF3710 at 602.666 kb on - strand, within GFF3710 at 602.737 kb on + strand, within GFF3710 at 602.738 kb on - strand, within GFF3710 at 602.738 kb on - strand, within GFF3710 at 602.738 kb on - strand, within GFF3710 at 602.872 kb on + strand, within GFF3710 at 602.872 kb on + strand, within GFF3710 at 602.872 kb on + strand, within GFF3710 at 602.872 kb on + strand, within GFF3710 at 602.873 kb on - strand, within GFF3710 at 603.017 kb on - strand, within GFF3710 at 603.136 kb on + strand, within GFF3710 at 603.137 kb on - strand, within GFF3710 at 603.137 kb on - strand, within GFF3710
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 600,822 - GFF3708 0.17 +0.0 600,858 - GFF3708 0.21 +0.3 600,858 - GFF3708 0.21 +0.4 601,082 + GFF3708 0.44 -0.1 601,083 - GFF3708 0.44 +0.3 601,232 + GFF3708 0.59 +1.9 601,232 + GFF3708 0.59 +0.1 601,232 + GFF3708 0.59 +0.3 601,233 - GFF3708 0.60 -0.6 601,233 - GFF3708 0.60 +0.5 601,235 + GFF3708 0.60 -0.1 601,235 + GFF3708 0.60 -0.4 601,235 + GFF3708 0.60 +0.4 601,235 + GFF3708 0.60 +0.0 601,235 + GFF3708 0.60 +0.6 601,236 - GFF3708 0.60 -0.4 601,236 - GFF3708 0.60 +0.2 601,236 - GFF3708 0.60 +0.7 601,236 - GFF3708 0.60 +1.4 601,622 + -1.1 601,622 + -0.5 601,622 + -0.7 601,622 + +0.3 601,622 + -0.3 601,623 - -0.6 601,623 - +0.2 601,623 - +0.2 601,623 - +0.1 601,623 - -0.1 601,623 - +0.6 601,623 - +0.4 601,623 - +0.0 601,623 - -0.2 601,688 + GFF3709 0.12 -0.0 601,688 + GFF3709 0.12 +0.3 601,688 + GFF3709 0.12 +0.2 601,688 + GFF3709 0.12 -0.3 601,688 + GFF3709 0.12 +1.0 601,688 + GFF3709 0.12 -0.4 601,688 + GFF3709 0.12 +0.9 601,689 - GFF3709 0.13 +1.0 601,689 - GFF3709 0.13 +0.1 602,242 + -0.9 602,283 + +0.3 602,283 + -0.5 602,283 + +1.2 602,283 + -1.5 602,283 + -0.2 602,283 + +0.7 602,283 + +0.7 602,283 + +0.1 602,283 + +0.6 602,283 + +1.7 602,283 + -0.3 602,283 + -0.1 602,283 + +0.1 602,283 + +1.3 602,284 - -0.3 602,284 - +0.3 602,284 - +0.3 602,284 - +0.3 602,515 + GFF3710 0.18 +0.3 602,638 + GFF3710 0.30 -0.6 602,638 + GFF3710 0.30 -0.4 602,638 + GFF3710 0.30 -0.5 602,638 + GFF3710 0.30 -0.4 602,639 - GFF3710 0.30 -0.2 602,639 - GFF3710 0.30 -0.1 602,639 - GFF3710 0.30 -0.2 602,639 - GFF3710 0.30 -0.1 602,639 - GFF3710 0.30 +0.0 602,666 - GFF3710 0.32 -2.1 602,666 - GFF3710 0.32 -0.1 602,737 + GFF3710 0.39 -0.1 602,738 - GFF3710 0.39 -0.0 602,738 - GFF3710 0.39 +0.6 602,738 - GFF3710 0.39 -0.1 602,872 + GFF3710 0.52 +0.5 602,872 + GFF3710 0.52 -0.1 602,872 + GFF3710 0.52 -0.0 602,872 + GFF3710 0.52 -0.0 602,873 - GFF3710 0.52 +0.4 603,017 - GFF3710 0.66 -0.5 603,136 + GFF3710 0.77 -1.2 603,137 - GFF3710 0.77 -0.2 603,137 - GFF3710 0.77 -0.6
Or see this region's nucleotide sequence