Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3628 and GFF3629 overlap by 4 nucleotides GFF3629 and GFF3630 are separated by 48 nucleotides GFF3630 and GFF3631 overlap by 4 nucleotides
GFF3628 - Ornithine cyclodeaminase (EC 4.3.1.12), at 514,553 to 515,455
GFF3628
GFF3629 - Metallo-beta-lactamase family protein, at 515,452 to 516,576
GFF3629
GFF3630 - ortholog of Bordetella pertussis (BX470248) BP1188, at 516,625 to 517,509
GFF3630
GFF3631 - Universal stress protein family 4, at 517,506 to 518,375
GFF3631
Position (kb) 515
516
517 Strain fitness (log2 ratio) -1
0
1 at 514.977 kb on - strand, within GFF3628 at 515.421 kb on + strand at 515.471 kb on + strand at 516.017 kb on + strand, within GFF3629 at 516.018 kb on - strand, within GFF3629 at 516.018 kb on - strand, within GFF3629 at 516.047 kb on + strand, within GFF3629 at 516.047 kb on + strand, within GFF3629 at 516.048 kb on - strand, within GFF3629 at 516.048 kb on - strand, within GFF3629 at 516.048 kb on - strand, within GFF3629 at 516.048 kb on - strand, within GFF3629 at 516.048 kb on - strand, within GFF3629 at 516.087 kb on - strand, within GFF3629 at 516.152 kb on + strand, within GFF3629 at 516.152 kb on + strand, within GFF3629 at 516.152 kb on + strand, within GFF3629 at 516.512 kb on + strand at 517.406 kb on + strand, within GFF3630 at 517.406 kb on + strand, within GFF3630 at 517.407 kb on - strand, within GFF3630 at 517.407 kb on - strand, within GFF3630 at 517.407 kb on - strand, within GFF3630
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 514,977 - GFF3628 0.47 -0.1 515,421 + -0.4 515,471 + -0.1 516,017 + GFF3629 0.50 +0.3 516,018 - GFF3629 0.50 -0.3 516,018 - GFF3629 0.50 +0.9 516,047 + GFF3629 0.53 -0.6 516,047 + GFF3629 0.53 +0.0 516,048 - GFF3629 0.53 -0.2 516,048 - GFF3629 0.53 +0.4 516,048 - GFF3629 0.53 -0.1 516,048 - GFF3629 0.53 -0.8 516,048 - GFF3629 0.53 +0.6 516,087 - GFF3629 0.56 -0.8 516,152 + GFF3629 0.62 +0.3 516,152 + GFF3629 0.62 +0.2 516,152 + GFF3629 0.62 +0.1 516,512 + -0.5 517,406 + GFF3630 0.88 +0.4 517,406 + GFF3630 0.88 -0.2 517,407 - GFF3630 0.88 +0.0 517,407 - GFF3630 0.88 +0.1 517,407 - GFF3630 0.88 -1.3
Or see this region's nucleotide sequence