Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3484 and GFF3485 are separated by 430 nucleotides GFF3485 and GFF3486 are separated by 35 nucleotides GFF3486 and GFF3487 are separated by 84 nucleotides
GFF3484 - Mobile element protein, at 364,913 to 365,908
GFF3484
GFF3485 - Plasmid replication initiator protein, at 366,339 to 367,178
GFF3485
GFF3486 - hypothetical protein, at 367,214 to 367,522
GFF3486
GFF3487 - hypothetical protein, at 367,607 to 368,242
GFF3487
Position (kb) 366
367
368 Strain fitness (log2 ratio) -2
-1
0
1 at 365.610 kb on + strand, within GFF3484 at 365.610 kb on + strand, within GFF3484 at 365.611 kb on - strand, within GFF3484 at 365.611 kb on - strand, within GFF3484 at 365.611 kb on - strand, within GFF3484 at 365.612 kb on + strand, within GFF3484 at 365.613 kb on - strand, within GFF3484 at 365.628 kb on - strand, within GFF3484 at 365.880 kb on - strand at 365.880 kb on - strand at 366.199 kb on + strand at 366.607 kb on + strand, within GFF3485 at 366.655 kb on + strand, within GFF3485 at 366.655 kb on + strand, within GFF3485 at 366.655 kb on + strand, within GFF3485 at 366.670 kb on - strand, within GFF3485 at 367.252 kb on - strand, within GFF3486 at 367.317 kb on + strand, within GFF3486 at 367.317 kb on + strand, within GFF3486 at 367.317 kb on + strand, within GFF3486 at 367.404 kb on + strand, within GFF3486 at 367.431 kb on + strand, within GFF3486 at 367.431 kb on + strand, within GFF3486 at 367.432 kb on - strand, within GFF3486 at 367.684 kb on - strand, within GFF3487 at 367.892 kb on - strand, within GFF3487
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 365,610 + GFF3484 0.70 -0.2 365,610 + GFF3484 0.70 -0.3 365,611 - GFF3484 0.70 -0.5 365,611 - GFF3484 0.70 +0.3 365,611 - GFF3484 0.70 -0.5 365,612 + GFF3484 0.70 -2.1 365,613 - GFF3484 0.70 -0.6 365,628 - GFF3484 0.72 -0.2 365,880 - -0.8 365,880 - -0.6 366,199 + +1.1 366,607 + GFF3485 0.32 +0.4 366,655 + GFF3485 0.38 +0.7 366,655 + GFF3485 0.38 -0.1 366,655 + GFF3485 0.38 -0.3 366,670 - GFF3485 0.39 +1.4 367,252 - GFF3486 0.12 +0.7 367,317 + GFF3486 0.33 -0.6 367,317 + GFF3486 0.33 +0.4 367,317 + GFF3486 0.33 +0.9 367,404 + GFF3486 0.61 -1.2 367,431 + GFF3486 0.70 -0.0 367,431 + GFF3486 0.70 -0.1 367,432 - GFF3486 0.71 -1.5 367,684 - GFF3487 0.12 -0.1 367,892 - GFF3487 0.45 +0.4
Or see this region's nucleotide sequence