Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3424 and GFF3425 are separated by 121 nucleotides GFF3425 and GFF3426 overlap by 8 nucleotides GFF3426 and GFF3427 overlap by 12 nucleotides GFF3427 and GFF3428 overlap by 4 nucleotides GFF3428 and GFF3429 are separated by 27 nucleotides
GFF3424 - Protein sirB1, at 308,537 to 309,394
GFF3424
GFF3425 - Nucleoside-diphosphate-sugar epimerases, at 309,516 to 310,148
GFF3425
GFF3426 - hypothetical protein, at 310,141 to 310,275
GFF3426
GFF3427 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 310,264 to 311,901
GFF3427
GFF3428 - Ferredoxin, at 311,898 to 312,227
GFF3428
GFF3429 - Alkanesulfonates-binding protein, at 312,255 to 313,304
GFF3429
Position (kb) 310
311
312 Strain fitness (log2 ratio) -1
0
1
2 at 309.314 kb on + strand at 309.314 kb on + strand at 309.315 kb on - strand at 309.315 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.435 kb on - strand at 309.502 kb on + strand at 309.503 kb on - strand at 309.666 kb on + strand, within GFF3425 at 309.765 kb on + strand, within GFF3425 at 309.765 kb on + strand, within GFF3425 at 309.765 kb on + strand, within GFF3425 at 309.766 kb on - strand, within GFF3425 at 309.801 kb on + strand, within GFF3425 at 309.802 kb on - strand, within GFF3425 at 309.879 kb on + strand, within GFF3425 at 309.879 kb on + strand, within GFF3425 at 309.879 kb on + strand, within GFF3425 at 309.880 kb on - strand, within GFF3425 at 310.180 kb on - strand, within GFF3426 at 310.225 kb on - strand, within GFF3426 at 310.672 kb on + strand, within GFF3427 at 310.673 kb on - strand, within GFF3427 at 310.901 kb on + strand, within GFF3427 at 310.903 kb on + strand, within GFF3427 at 310.904 kb on - strand, within GFF3427 at 310.904 kb on - strand, within GFF3427 at 310.960 kb on + strand, within GFF3427 at 310.961 kb on - strand, within GFF3427 at 310.961 kb on - strand, within GFF3427 at 310.961 kb on - strand, within GFF3427 at 311.005 kb on + strand, within GFF3427 at 311.005 kb on + strand, within GFF3427 at 311.006 kb on - strand, within GFF3427 at 311.024 kb on - strand, within GFF3427 at 311.315 kb on - strand, within GFF3427 at 311.315 kb on - strand, within GFF3427 at 311.566 kb on + strand, within GFF3427 at 311.566 kb on + strand, within GFF3427 at 311.725 kb on + strand, within GFF3427 at 311.726 kb on - strand, within GFF3427 at 312.045 kb on + strand, within GFF3428 at 312.066 kb on + strand, within GFF3428 at 312.066 kb on + strand, within GFF3428 at 312.067 kb on - strand, within GFF3428 at 312.142 kb on - strand, within GFF3428 at 312.465 kb on + strand, within GFF3429 at 312.466 kb on - strand, within GFF3429 at 312.532 kb on - strand, within GFF3429 at 312.595 kb on - strand, within GFF3429
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 309,314 + -0.0 309,314 + +2.3 309,315 - +0.9 309,315 - +0.8 309,435 - -1.2 309,435 - +0.9 309,435 - +0.5 309,435 - -0.4 309,435 - -0.2 309,435 - -1.4 309,435 - -0.3 309,435 - +0.3 309,435 - -0.5 309,435 - -0.0 309,435 - +1.3 309,435 - +0.1 309,502 + -0.5 309,503 - +0.5 309,666 + GFF3425 0.24 -0.0 309,765 + GFF3425 0.39 +0.2 309,765 + GFF3425 0.39 +0.2 309,765 + GFF3425 0.39 -0.2 309,766 - GFF3425 0.39 +1.0 309,801 + GFF3425 0.45 -0.3 309,802 - GFF3425 0.45 +0.9 309,879 + GFF3425 0.57 -0.4 309,879 + GFF3425 0.57 -0.1 309,879 + GFF3425 0.57 -0.2 309,880 - GFF3425 0.58 -0.3 310,180 - GFF3426 0.29 +0.9 310,225 - GFF3426 0.62 -0.2 310,672 + GFF3427 0.25 -0.4 310,673 - GFF3427 0.25 -0.2 310,901 + GFF3427 0.39 +0.2 310,903 + GFF3427 0.39 -0.9 310,904 - GFF3427 0.39 -0.2 310,904 - GFF3427 0.39 -0.4 310,960 + GFF3427 0.42 -0.9 310,961 - GFF3427 0.43 +0.1 310,961 - GFF3427 0.43 -0.7 310,961 - GFF3427 0.43 -0.3 311,005 + GFF3427 0.45 +0.7 311,005 + GFF3427 0.45 -0.2 311,006 - GFF3427 0.45 -0.2 311,024 - GFF3427 0.46 +0.2 311,315 - GFF3427 0.64 -0.3 311,315 - GFF3427 0.64 -0.4 311,566 + GFF3427 0.79 -0.1 311,566 + GFF3427 0.79 -0.3 311,725 + GFF3427 0.89 +0.3 311,726 - GFF3427 0.89 -0.2 312,045 + GFF3428 0.45 +1.0 312,066 + GFF3428 0.51 -0.4 312,066 + GFF3428 0.51 +0.0 312,067 - GFF3428 0.51 +0.1 312,142 - GFF3428 0.74 +0.6 312,465 + GFF3429 0.20 -0.7 312,466 - GFF3429 0.20 -0.3 312,532 - GFF3429 0.26 -0.0 312,595 - GFF3429 0.32 +0.7
Or see this region's nucleotide sequence