Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3314

Experiment: Ying_OrganicAcid7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3313 and GFF3314 are separated by 128 nucleotidesGFF3314 and GFF3315 are separated by 57 nucleotidesGFF3315 and GFF3316 are separated by 343 nucleotides GFF3313 - putative exported protein, at 199,694 to 200,683 GFF3313 GFF3314 - Transcriptional regulator, at 200,812 to 201,705 GFF3314 GFF3315 - FIG00932412: hypothetical protein, at 201,763 to 202,158 GFF3315 GFF3316 - XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase), at 202,502 to 203,353 GFF3316 Position (kb) 200 201 202Strain fitness (log2 ratio) -2 -1 0 1at 199.813 kb on - strand, within GFF3313at 200.097 kb on + strand, within GFF3313at 200.097 kb on + strand, within GFF3313at 200.097 kb on + strand, within GFF3313at 200.097 kb on + strand, within GFF3313at 200.098 kb on - strand, within GFF3313at 200.098 kb on - strand, within GFF3313at 200.205 kb on + strand, within GFF3313at 200.291 kb on + strand, within GFF3313at 200.295 kb on + strand, within GFF3313at 200.295 kb on + strand, within GFF3313at 200.296 kb on - strand, within GFF3313at 200.296 kb on - strand, within GFF3313at 200.343 kb on + strand, within GFF3313at 200.344 kb on - strand, within GFF3313at 200.918 kb on + strand, within GFF3314at 200.919 kb on - strand, within GFF3314at 201.004 kb on + strand, within GFF3314at 201.004 kb on + strand, within GFF3314at 201.004 kb on + strand, within GFF3314at 201.005 kb on - strand, within GFF3314at 201.196 kb on + strand, within GFF3314at 201.196 kb on + strand, within GFF3314at 201.197 kb on - strand, within GFF3314at 201.388 kb on + strand, within GFF3314at 201.764 kb on + strandat 201.764 kb on + strandat 201.764 kb on + strandat 201.764 kb on + strandat 201.764 kb on + strandat 201.839 kb on + strand, within GFF3315at 201.839 kb on + strand, within GFF3315at 201.840 kb on - strand, within GFF3315at 201.840 kb on - strand, within GFF3315at 202.031 kb on + strand, within GFF3315at 202.031 kb on + strand, within GFF3315at 202.032 kb on - strand, within GFF3315at 202.032 kb on - strand, within GFF3315at 202.055 kb on + strand, within GFF3315at 202.055 kb on + strand, within GFF3315at 202.055 kb on + strand, within GFF3315at 202.055 kb on + strand, within GFF3315at 202.056 kb on - strand, within GFF3315at 202.056 kb on - strand, within GFF3315at 202.056 kb on - strand, within GFF3315at 202.056 kb on - strand, within GFF3315at 202.083 kb on - strand, within GFF3315at 202.316 kb on - strandat 202.380 kb on + strandat 202.380 kb on + strandat 202.380 kb on + strandat 202.381 kb on - strandat 202.381 kb on - strandat 202.381 kb on - strandat 202.401 kb on + strandat 202.401 kb on + strandat 202.401 kb on + strandat 202.401 kb on + strandat 202.401 kb on + strandat 202.401 kb on + strandat 202.402 kb on - strandat 202.402 kb on - strandat 202.427 kb on + strandat 202.427 kb on + strandat 202.428 kb on - strandat 202.464 kb on + strandat 202.464 kb on + strandat 202.468 kb on + strandat 202.469 kb on - strandat 202.469 kb on - strandat 202.469 kb on - strandat 202.474 kb on + strandat 202.474 kb on + strandat 202.474 kb on + strandat 202.474 kb on + strandat 202.474 kb on + strandat 202.474 kb on + strandat 202.475 kb on - strandat 202.475 kb on - strandat 202.475 kb on - strandat 202.475 kb on - strandat 202.527 kb on + strandat 202.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
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199,813 - GFF3313 0.12 -0.5
200,097 + GFF3313 0.41 +0.1
200,097 + GFF3313 0.41 -0.3
200,097 + GFF3313 0.41 -0.1
200,097 + GFF3313 0.41 +0.1
200,098 - GFF3313 0.41 -0.2
200,098 - GFF3313 0.41 -0.1
200,205 + GFF3313 0.52 -0.0
200,291 + GFF3313 0.60 +0.3
200,295 + GFF3313 0.61 +1.4
200,295 + GFF3313 0.61 -0.5
200,296 - GFF3313 0.61 -0.2
200,296 - GFF3313 0.61 -0.0
200,343 + GFF3313 0.66 -0.4
200,344 - GFF3313 0.66 +0.8
200,918 + GFF3314 0.12 +0.0
200,919 - GFF3314 0.12 -0.6
201,004 + GFF3314 0.21 +1.3
201,004 + GFF3314 0.21 +0.3
201,004 + GFF3314 0.21 +0.7
201,005 - GFF3314 0.22 -1.1
201,196 + GFF3314 0.43 +0.2
201,196 + GFF3314 0.43 -0.2
201,197 - GFF3314 0.43 +0.2
201,388 + GFF3314 0.64 +0.7
201,764 + +0.1
201,764 + +1.0
201,764 + -1.9
201,764 + +0.1
201,764 + +0.6
201,839 + GFF3315 0.19 +0.3
201,839 + GFF3315 0.19 -0.5
201,840 - GFF3315 0.19 -0.2
201,840 - GFF3315 0.19 -0.1
202,031 + GFF3315 0.68 -0.4
202,031 + GFF3315 0.68 +0.3
202,032 - GFF3315 0.68 +0.0
202,032 - GFF3315 0.68 +0.5
202,055 + GFF3315 0.74 -0.4
202,055 + GFF3315 0.74 -0.1
202,055 + GFF3315 0.74 +0.2
202,055 + GFF3315 0.74 +0.3
202,056 - GFF3315 0.74 -0.7
202,056 - GFF3315 0.74 +1.6
202,056 - GFF3315 0.74 +0.1
202,056 - GFF3315 0.74 +0.8
202,083 - GFF3315 0.81 +0.2
202,316 - +0.4
202,380 + +0.3
202,380 + +0.2
202,380 + -0.4
202,381 - -0.4
202,381 - +0.4
202,381 - +1.7
202,401 + +0.0
202,401 + -0.1
202,401 + +0.4
202,401 + -0.6
202,401 + -0.5
202,401 + -0.2
202,402 - -0.8
202,402 - -1.2
202,427 + -0.2
202,427 + +0.2
202,428 - +0.6
202,464 + -0.0
202,464 + -1.5
202,468 + -0.1
202,469 - -0.2
202,469 - -1.0
202,469 - -0.1
202,474 + -0.9
202,474 + -0.6
202,474 + +0.9
202,474 + +0.0
202,474 + -0.7
202,474 + +0.3
202,475 - -0.4
202,475 - -0.7
202,475 - -0.0
202,475 - -0.2
202,527 + +0.4
202,528 - +0.0

Or see this region's nucleotide sequence