Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3201

Experiment: Ying_OrganicAcid7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3199 and GFF3200 overlap by 4 nucleotidesGFF3200 and GFF3201 are separated by 202 nucleotidesGFF3201 and GFF3202 are separated by 98 nucleotides GFF3199 - hypothetical protein, at 86,729 to 87,487 GFF3199 GFF3200 - hypothetical protein, at 87,484 to 87,939 GFF3200 GFF3201 - hypothetical protein, at 88,142 to 88,810 GFF3201 GFF3202 - hypothetical protein, at 88,909 to 89,529 GFF3202 Position (kb) 88 89Strain fitness (log2 ratio) -1 0 1at 87.165 kb on + strand, within GFF3199at 87.597 kb on - strand, within GFF3200at 88.632 kb on + strand, within GFF3201at 88.632 kb on + strand, within GFF3201at 88.776 kb on + strandat 88.777 kb on - strandat 88.963 kb on + strandat 89.243 kb on + strand, within GFF3202at 89.616 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
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87,165 + GFF3199 0.57 -0.5
87,597 - GFF3200 0.25 -0.4
88,632 + GFF3201 0.73 -0.2
88,632 + GFF3201 0.73 +0.7
88,776 + +0.2
88,777 - -0.4
88,963 + -0.2
89,243 + GFF3202 0.54 +0.1
89,616 + +0.7

Or see this region's nucleotide sequence