Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3101 and GFF3102 are separated by 14 nucleotides GFF3102 and GFF3103 are separated by 7 nucleotides GFF3103 and GFF3104 are separated by 94 nucleotides GFF3104 and GFF3105 are separated by 172 nucleotides
GFF3101 - LysR family transcriptional regulator lrhA, at 178,626 to 179,477
GFF3101
GFF3102 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 179,492 to 180,229
GFF3102
GFF3103 - Extracellular ligand-binding receptor precursor, at 180,237 to 181,370
GFF3103
GFF3104 - FIG026291: Hypothetical periplasmic protein, at 181,465 to 182,040
GFF3104
GFF3105 - hypothetical protein, at 182,213 to 182,407
GFF3105
Position (kb) 180
181
182 Strain fitness (log2 ratio) -1
0
1 at 179.256 kb on + strand, within GFF3101 at 179.406 kb on + strand at 179.406 kb on + strand at 179.407 kb on - strand at 179.488 kb on + strand at 179.790 kb on - strand, within GFF3102 at 179.801 kb on + strand, within GFF3102 at 179.801 kb on + strand, within GFF3102 at 179.801 kb on + strand, within GFF3102 at 179.802 kb on - strand, within GFF3102 at 179.802 kb on - strand, within GFF3102 at 179.802 kb on - strand, within GFF3102 at 179.834 kb on + strand, within GFF3102 at 179.858 kb on - strand, within GFF3102 at 179.858 kb on - strand, within GFF3102 at 180.131 kb on + strand, within GFF3102 at 180.131 kb on + strand, within GFF3102 at 180.131 kb on + strand, within GFF3102 at 180.132 kb on - strand, within GFF3102 at 180.132 kb on - strand, within GFF3102 at 180.132 kb on - strand, within GFF3102 at 180.137 kb on + strand, within GFF3102 at 180.137 kb on + strand, within GFF3102 at 180.241 kb on + strand at 180.242 kb on - strand at 180.242 kb on - strand at 180.242 kb on - strand at 180.242 kb on - strand at 180.430 kb on + strand, within GFF3103 at 180.430 kb on + strand, within GFF3103 at 180.430 kb on + strand, within GFF3103 at 180.430 kb on + strand, within GFF3103 at 180.430 kb on + strand, within GFF3103 at 180.430 kb on + strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.431 kb on - strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.454 kb on + strand, within GFF3103 at 180.455 kb on - strand, within GFF3103 at 180.607 kb on + strand, within GFF3103 at 180.607 kb on + strand, within GFF3103 at 180.607 kb on + strand, within GFF3103 at 180.608 kb on - strand, within GFF3103 at 181.132 kb on + strand, within GFF3103 at 181.132 kb on + strand, within GFF3103 at 181.132 kb on + strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.547 kb on + strand, within GFF3104 at 181.547 kb on + strand, within GFF3104 at 181.547 kb on + strand, within GFF3104 at 181.547 kb on + strand, within GFF3104 at 181.548 kb on - strand, within GFF3104 at 181.548 kb on - strand, within GFF3104 at 181.548 kb on - strand, within GFF3104 at 181.548 kb on - strand, within GFF3104 at 181.548 kb on - strand, within GFF3104 at 181.862 kb on + strand, within GFF3104 at 181.862 kb on + strand, within GFF3104 at 181.862 kb on + strand, within GFF3104 at 181.862 kb on + strand, within GFF3104 at 181.863 kb on - strand, within GFF3104 at 181.878 kb on - strand, within GFF3104 at 181.878 kb on - strand, within GFF3104 at 181.898 kb on + strand, within GFF3104 at 182.164 kb on + strand at 182.215 kb on - strand at 182.310 kb on + strand, within GFF3105 at 182.310 kb on + strand, within GFF3105 at 182.310 kb on + strand, within GFF3105 at 182.311 kb on - strand, within GFF3105
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 179,256 + GFF3101 0.74 +0.6 179,406 + +0.1 179,406 + -0.3 179,407 - +0.0 179,488 + -0.7 179,790 - GFF3102 0.40 -0.1 179,801 + GFF3102 0.42 -0.3 179,801 + GFF3102 0.42 +0.4 179,801 + GFF3102 0.42 -0.8 179,802 - GFF3102 0.42 -0.7 179,802 - GFF3102 0.42 +0.3 179,802 - GFF3102 0.42 -0.4 179,834 + GFF3102 0.46 +0.2 179,858 - GFF3102 0.50 -0.6 179,858 - GFF3102 0.50 +0.0 180,131 + GFF3102 0.87 +0.8 180,131 + GFF3102 0.87 +0.2 180,131 + GFF3102 0.87 +0.1 180,132 - GFF3102 0.87 -0.2 180,132 - GFF3102 0.87 +0.9 180,132 - GFF3102 0.87 -0.6 180,137 + GFF3102 0.87 +0.9 180,137 + GFF3102 0.87 -0.1 180,241 + -0.0 180,242 - +0.0 180,242 - -0.6 180,242 - -0.3 180,242 - +0.1 180,430 + GFF3103 0.17 +0.4 180,430 + GFF3103 0.17 +0.1 180,430 + GFF3103 0.17 -0.2 180,430 + GFF3103 0.17 -0.7 180,430 + GFF3103 0.17 -0.3 180,430 + GFF3103 0.17 -1.0 180,431 - GFF3103 0.17 +0.4 180,431 - GFF3103 0.17 -0.2 180,431 - GFF3103 0.17 +0.3 180,431 - GFF3103 0.17 +0.3 180,431 - GFF3103 0.17 +1.3 180,431 - GFF3103 0.17 -0.8 180,431 - GFF3103 0.17 +0.5 180,431 - GFF3103 0.17 +0.1 180,431 - GFF3103 0.17 -1.2 180,431 - GFF3103 0.17 -0.7 180,454 + GFF3103 0.19 -0.1 180,454 + GFF3103 0.19 +1.0 180,454 + GFF3103 0.19 -0.9 180,454 + GFF3103 0.19 +0.2 180,454 + GFF3103 0.19 +0.1 180,454 + GFF3103 0.19 -0.4 180,454 + GFF3103 0.19 -1.2 180,455 - GFF3103 0.19 +0.5 180,607 + GFF3103 0.33 -0.3 180,607 + GFF3103 0.33 -0.1 180,607 + GFF3103 0.33 -0.1 180,608 - GFF3103 0.33 -0.0 181,132 + GFF3103 0.79 +1.1 181,132 + GFF3103 0.79 -0.3 181,132 + GFF3103 0.79 +0.4 181,133 - GFF3103 0.79 +0.5 181,133 - GFF3103 0.79 +0.5 181,133 - GFF3103 0.79 +0.7 181,133 - GFF3103 0.79 -0.3 181,133 - GFF3103 0.79 -0.1 181,133 - GFF3103 0.79 -0.1 181,133 - GFF3103 0.79 +0.2 181,133 - GFF3103 0.79 -0.6 181,133 - GFF3103 0.79 -1.2 181,133 - GFF3103 0.79 +1.3 181,547 + GFF3104 0.14 +1.0 181,547 + GFF3104 0.14 +0.4 181,547 + GFF3104 0.14 +0.7 181,547 + GFF3104 0.14 +0.4 181,548 - GFF3104 0.14 -0.1 181,548 - GFF3104 0.14 -0.1 181,548 - GFF3104 0.14 -0.3 181,548 - GFF3104 0.14 +0.6 181,548 - GFF3104 0.14 +0.0 181,862 + GFF3104 0.69 -0.6 181,862 + GFF3104 0.69 +0.4 181,862 + GFF3104 0.69 +0.5 181,862 + GFF3104 0.69 +0.1 181,863 - GFF3104 0.69 -0.0 181,878 - GFF3104 0.72 +0.4 181,878 - GFF3104 0.72 -0.5 181,898 + GFF3104 0.75 +0.3 182,164 + -0.4 182,215 - +0.4 182,310 + GFF3105 0.50 -0.1 182,310 + GFF3105 0.50 -0.1 182,310 + GFF3105 0.50 -0.8 182,311 - GFF3105 0.50 +1.3
Or see this region's nucleotide sequence