Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3045 and GFF3046 are separated by 14 nucleotides GFF3046 and GFF3047 are separated by 16 nucleotides GFF3047 and GFF3048 are separated by 91 nucleotides GFF3048 and GFF3049 are separated by 86 nucleotides
GFF3045 - Transcriptional regulator, LysR family, at 125,915 to 126,841
GFF3045
GFF3046 - NADPH:quinone oxidoreductase, at 126,856 to 127,422
GFF3046
GFF3047 - Bll3153 protein, at 127,439 to 127,891
GFF3047
GFF3048 - hypothetical protein, at 127,983 to 128,525
GFF3048
GFF3049 - hypothetical protein, at 128,612 to 129,130
GFF3049
Position (kb) 127
128 Strain fitness (log2 ratio) -1
0
1
2 at 126.560 kb on + strand, within GFF3045 at 126.812 kb on + strand at 126.812 kb on + strand at 126.812 kb on + strand at 126.813 kb on - strand at 127.093 kb on + strand, within GFF3046 at 127.503 kb on + strand, within GFF3047 at 127.639 kb on - strand, within GFF3047 at 127.671 kb on + strand, within GFF3047 at 127.672 kb on - strand, within GFF3047 at 127.827 kb on + strand, within GFF3047 at 127.827 kb on + strand, within GFF3047 at 127.827 kb on + strand, within GFF3047 at 127.828 kb on - strand, within GFF3047 at 128.583 kb on + strand at 128.584 kb on - strand at 128.638 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 126,560 + GFF3045 0.70 -0.2 126,812 + -0.4 126,812 + +0.5 126,812 + -0.3 126,813 - +0.2 127,093 + GFF3046 0.42 -0.4 127,503 + GFF3047 0.14 +0.2 127,639 - GFF3047 0.44 +0.3 127,671 + GFF3047 0.51 +0.2 127,672 - GFF3047 0.51 +1.2 127,827 + GFF3047 0.86 +0.8 127,827 + GFF3047 0.86 +1.8 127,827 + GFF3047 0.86 +0.1 127,828 - GFF3047 0.86 +0.1 128,583 + -0.8 128,584 - +0.2 128,638 - +0.2
Or see this region's nucleotide sequence