Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3010

Experiment: Ying_OrganicAcid7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3009 and GFF3010 overlap by 4 nucleotidesGFF3010 and GFF3011 overlap by 4 nucleotidesGFF3011 and GFF3012 are separated by 19 nucleotides GFF3009 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 86,754 to 87,950 GFF3009 GFF3010 - 3-oxoacyl-[ACP] synthase, at 87,947 to 88,741 GFF3010 GFF3011 - 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60), at 88,738 to 89,184 GFF3011 GFF3012 - 3-oxoacyl-[ACP] reductase (EC 1.1.1.100), at 89,204 to 89,923 GFF3012 Position (kb) 87 88 89Strain fitness (log2 ratio) -1 0 1at 86.947 kb on - strand, within GFF3009at 87.100 kb on - strand, within GFF3009at 87.147 kb on + strand, within GFF3009at 87.147 kb on + strand, within GFF3009at 87.148 kb on - strand, within GFF3009at 87.148 kb on - strand, within GFF3009at 87.345 kb on + strand, within GFF3009at 87.345 kb on + strand, within GFF3009at 87.345 kb on + strand, within GFF3009at 87.346 kb on - strand, within GFF3009at 87.346 kb on - strand, within GFF3009at 87.346 kb on - strand, within GFF3009at 87.346 kb on - strand, within GFF3009at 87.393 kb on + strand, within GFF3009at 87.394 kb on - strand, within GFF3009at 87.394 kb on - strand, within GFF3009at 87.615 kb on + strand, within GFF3009at 87.615 kb on + strand, within GFF3009at 87.615 kb on + strand, within GFF3009at 87.615 kb on + strand, within GFF3009at 87.615 kb on + strand, within GFF3009at 87.615 kb on + strand, within GFF3009at 87.616 kb on - strand, within GFF3009at 87.616 kb on - strand, within GFF3009at 87.616 kb on - strand, within GFF3009at 88.313 kb on + strand, within GFF3010at 88.314 kb on - strand, within GFF3010at 88.364 kb on + strand, within GFF3010at 88.445 kb on + strand, within GFF3010at 88.445 kb on + strand, within GFF3010at 88.446 kb on - strand, within GFF3010at 88.697 kb on + strandat 88.697 kb on + strandat 88.698 kb on - strandat 88.698 kb on - strandat 88.924 kb on + strand, within GFF3011at 88.993 kb on + strand, within GFF3011at 88.994 kb on - strand, within GFF3011at 88.994 kb on - strand, within GFF3011at 89.104 kb on + strand, within GFF3011at 89.104 kb on + strand, within GFF3011at 89.105 kb on - strand, within GFF3011at 89.543 kb on + strand, within GFF3012at 89.543 kb on + strand, within GFF3012at 89.544 kb on - strand, within GFF3012at 89.544 kb on - strand, within GFF3012at 89.544 kb on - strand, within GFF3012at 89.544 kb on - strand, within GFF3012at 89.544 kb on - strand, within GFF3012at 89.544 kb on - strand, within GFF3012at 89.544 kb on - strand, within GFF3012at 89.651 kb on + strand, within GFF3012at 89.651 kb on + strand, within GFF3012at 89.651 kb on + strand, within GFF3012

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
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86,947 - GFF3009 0.16 -0.6
87,100 - GFF3009 0.29 +1.5
87,147 + GFF3009 0.33 -0.2
87,147 + GFF3009 0.33 +0.1
87,148 - GFF3009 0.33 -0.0
87,148 - GFF3009 0.33 +0.7
87,345 + GFF3009 0.49 -0.4
87,345 + GFF3009 0.49 +0.0
87,345 + GFF3009 0.49 +0.6
87,346 - GFF3009 0.49 +0.2
87,346 - GFF3009 0.49 -0.6
87,346 - GFF3009 0.49 +0.6
87,346 - GFF3009 0.49 -1.0
87,393 + GFF3009 0.53 +0.5
87,394 - GFF3009 0.53 -0.3
87,394 - GFF3009 0.53 +0.0
87,615 + GFF3009 0.72 -0.2
87,615 + GFF3009 0.72 +0.7
87,615 + GFF3009 0.72 -0.3
87,615 + GFF3009 0.72 +0.5
87,615 + GFF3009 0.72 -0.2
87,615 + GFF3009 0.72 +0.5
87,616 - GFF3009 0.72 -0.1
87,616 - GFF3009 0.72 -0.1
87,616 - GFF3009 0.72 +0.5
88,313 + GFF3010 0.46 +1.1
88,314 - GFF3010 0.46 +0.1
88,364 + GFF3010 0.52 +0.8
88,445 + GFF3010 0.63 +1.7
88,445 + GFF3010 0.63 +0.2
88,446 - GFF3010 0.63 -0.5
88,697 + +0.6
88,697 + +0.5
88,698 - -1.0
88,698 - +0.0
88,924 + GFF3011 0.42 +0.4
88,993 + GFF3011 0.57 +0.3
88,994 - GFF3011 0.57 -0.1
88,994 - GFF3011 0.57 -0.5
89,104 + GFF3011 0.82 -0.5
89,104 + GFF3011 0.82 +0.4
89,105 - GFF3011 0.82 +0.1
89,543 + GFF3012 0.47 +0.1
89,543 + GFF3012 0.47 -0.1
89,544 - GFF3012 0.47 -0.0
89,544 - GFF3012 0.47 +0.2
89,544 - GFF3012 0.47 +1.1
89,544 - GFF3012 0.47 +0.2
89,544 - GFF3012 0.47 -1.6
89,544 - GFF3012 0.47 -0.3
89,544 - GFF3012 0.47 +1.0
89,651 + GFF3012 0.62 +1.5
89,651 + GFF3012 0.62 -0.2
89,651 + GFF3012 0.62 +0.9

Or see this region's nucleotide sequence