Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2976 and GFF2977 are separated by 12 nucleotides GFF2977 and GFF2978 overlap by 10 nucleotides GFF2978 and GFF2979 are separated by 347 nucleotides
GFF2976 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 54,006 to 55,058
GFF2976
GFF2977 - hypothetical protein, at 55,071 to 55,211
GFF2977
GFF2978 - D-2-hydroxyglutarate dehydrogenase, at 55,202 to 56,638
GFF2978
GFF2979 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-), at 56,986 to 57,930
GFF2979
Position (kb) 55
56
57 Strain fitness (log2 ratio) -1
0
1 at 55.015 kb on + strand at 55.016 kb on - strand at 55.096 kb on + strand, within GFF2977 at 55.096 kb on + strand, within GFF2977 at 55.096 kb on + strand, within GFF2977 at 55.097 kb on - strand, within GFF2977 at 55.097 kb on - strand, within GFF2977 at 55.097 kb on - strand, within GFF2977 at 55.207 kb on + strand at 55.207 kb on + strand at 55.207 kb on + strand at 55.208 kb on - strand at 55.293 kb on - strand at 55.316 kb on + strand at 55.682 kb on + strand, within GFF2978 at 55.782 kb on - strand, within GFF2978 at 55.799 kb on + strand, within GFF2978 at 55.799 kb on + strand, within GFF2978 at 55.800 kb on - strand, within GFF2978 at 55.800 kb on - strand, within GFF2978 at 55.800 kb on - strand, within GFF2978 at 55.800 kb on - strand, within GFF2978 at 55.800 kb on - strand, within GFF2978 at 55.800 kb on - strand, within GFF2978 at 55.800 kb on - strand, within GFF2978
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 55,015 + -0.2 55,016 - +0.9 55,096 + GFF2977 0.18 +0.4 55,096 + GFF2977 0.18 +0.3 55,096 + GFF2977 0.18 +0.3 55,097 - GFF2977 0.18 +0.5 55,097 - GFF2977 0.18 +0.4 55,097 - GFF2977 0.18 -0.4 55,207 + -0.1 55,207 + -0.3 55,207 + -0.5 55,208 - -0.3 55,293 - -0.4 55,316 + +0.9 55,682 + GFF2978 0.33 +0.4 55,782 - GFF2978 0.40 +0.5 55,799 + GFF2978 0.42 +0.7 55,799 + GFF2978 0.42 +0.5 55,800 - GFF2978 0.42 -0.2 55,800 - GFF2978 0.42 +0.0 55,800 - GFF2978 0.42 +0.4 55,800 - GFF2978 0.42 +1.6 55,800 - GFF2978 0.42 +0.0 55,800 - GFF2978 0.42 +0.5 55,800 - GFF2978 0.42 +0.0
Or see this region's nucleotide sequence