Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2961 and GFF2962 overlap by 4 nucleotides GFF2962 and GFF2963 are separated by 16 nucleotides GFF2963 and GFF2964 overlap by 4 nucleotides
GFF2961 - putative exported protein, at 40,019 to 40,996
GFF2961
GFF2962 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 40,993 to 41,898
GFF2962
GFF2963 - Dimethylmenaquinone methyltransferase family protein, at 41,915 to 42,625
GFF2963
GFF2964 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 42,622 to 43,632
GFF2964
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1 at 40.145 kb on + strand, within GFF2961 at 40.181 kb on + strand, within GFF2961 at 40.181 kb on + strand, within GFF2961 at 41.270 kb on - strand, within GFF2962 at 41.270 kb on - strand, within GFF2962 at 41.389 kb on + strand, within GFF2962 at 41.425 kb on + strand, within GFF2962 at 41.425 kb on + strand, within GFF2962 at 41.426 kb on - strand, within GFF2962 at 41.426 kb on - strand, within GFF2962 at 41.426 kb on - strand, within GFF2962 at 41.641 kb on + strand, within GFF2962 at 41.642 kb on - strand, within GFF2962 at 41.746 kb on + strand, within GFF2962 at 41.878 kb on + strand at 41.879 kb on - strand at 42.227 kb on + strand, within GFF2963 at 42.227 kb on + strand, within GFF2963 at 42.228 kb on - strand, within GFF2963 at 42.228 kb on - strand, within GFF2963
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 40,145 + GFF2961 0.13 -0.3 40,181 + GFF2961 0.17 -0.6 40,181 + GFF2961 0.17 -0.4 41,270 - GFF2962 0.31 -0.5 41,270 - GFF2962 0.31 +0.0 41,389 + GFF2962 0.44 +0.4 41,425 + GFF2962 0.48 +0.9 41,425 + GFF2962 0.48 -0.2 41,426 - GFF2962 0.48 -0.6 41,426 - GFF2962 0.48 +0.3 41,426 - GFF2962 0.48 +0.0 41,641 + GFF2962 0.72 +0.0 41,642 - GFF2962 0.72 -0.2 41,746 + GFF2962 0.83 +1.1 41,878 + -0.1 41,879 - +0.4 42,227 + GFF2963 0.44 -0.6 42,227 + GFF2963 0.44 -0.4 42,228 - GFF2963 0.44 -0.9 42,228 - GFF2963 0.44 +0.3
Or see this region's nucleotide sequence