Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2860 and GFF2861 overlap by 4 nucleotides GFF2861 and GFF2862 are separated by 46 nucleotides GFF2862 and GFF2863 are separated by 17 nucleotides
GFF2860 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 448,216 to 449,082
GFF2860
GFF2861 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 449,079 to 449,900
GFF2861
GFF2862 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 449,947 to 450,948
GFF2862
GFF2863 - Putative Rieske (2Fe-2S) family oxidoreductase, large subunit, at 450,966 to 452,033
GFF2863
Position (kb) 449
450
451 Strain fitness (log2 ratio) -1
0
1 at 448.987 kb on - strand, within GFF2860 at 449.011 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.020 kb on + strand at 449.021 kb on - strand at 449.215 kb on - strand, within GFF2861 at 449.397 kb on + strand, within GFF2861 at 449.397 kb on + strand, within GFF2861 at 449.398 kb on - strand, within GFF2861 at 449.581 kb on - strand, within GFF2861 at 449.637 kb on + strand, within GFF2861 at 449.739 kb on + strand, within GFF2861 at 449.739 kb on + strand, within GFF2861 at 450.071 kb on + strand, within GFF2862 at 450.073 kb on + strand, within GFF2862 at 450.074 kb on - strand, within GFF2862 at 450.100 kb on + strand, within GFF2862 at 450.125 kb on - strand, within GFF2862 at 450.457 kb on + strand, within GFF2862 at 450.457 kb on + strand, within GFF2862 at 450.458 kb on - strand, within GFF2862 at 450.499 kb on + strand, within GFF2862 at 450.500 kb on - strand, within GFF2862 at 450.568 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.583 kb on + strand, within GFF2862 at 450.584 kb on - strand, within GFF2862 at 450.584 kb on - strand, within GFF2862 at 450.584 kb on - strand, within GFF2862 at 450.589 kb on + strand, within GFF2862 at 450.589 kb on + strand, within GFF2862 at 450.590 kb on - strand, within GFF2862 at 450.779 kb on - strand, within GFF2862 at 451.105 kb on - strand, within GFF2863 at 451.204 kb on - strand, within GFF2863 at 451.263 kb on + strand, within GFF2863 at 451.263 kb on + strand, within GFF2863 at 451.264 kb on - strand, within GFF2863 at 451.644 kb on + strand, within GFF2863 at 451.644 kb on + strand, within GFF2863 at 451.645 kb on - strand, within GFF2863 at 451.645 kb on - strand, within GFF2863 at 451.645 kb on - strand, within GFF2863 at 451.758 kb on + strand, within GFF2863 at 451.903 kb on - strand, within GFF2863 at 451.903 kb on - strand, within GFF2863
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 448,987 - GFF2860 0.89 -0.1 449,011 + -0.0 449,020 + -0.6 449,020 + -0.3 449,020 + +0.2 449,020 + +0.7 449,020 + -0.2 449,021 - -0.6 449,215 - GFF2861 0.17 -0.3 449,397 + GFF2861 0.39 -1.0 449,397 + GFF2861 0.39 -0.3 449,398 - GFF2861 0.39 -0.6 449,581 - GFF2861 0.61 +0.1 449,637 + GFF2861 0.68 -1.0 449,739 + GFF2861 0.80 +0.0 449,739 + GFF2861 0.80 -0.1 450,071 + GFF2862 0.12 -0.2 450,073 + GFF2862 0.13 +0.9 450,074 - GFF2862 0.13 +0.2 450,100 + GFF2862 0.15 +0.1 450,125 - GFF2862 0.18 +0.9 450,457 + GFF2862 0.51 +0.9 450,457 + GFF2862 0.51 -0.1 450,458 - GFF2862 0.51 +0.0 450,499 + GFF2862 0.55 +0.5 450,500 - GFF2862 0.55 -0.1 450,568 + GFF2862 0.62 +0.7 450,583 + GFF2862 0.63 -0.4 450,583 + GFF2862 0.63 -0.0 450,583 + GFF2862 0.63 +0.1 450,583 + GFF2862 0.63 +0.8 450,583 + GFF2862 0.63 -1.4 450,583 + GFF2862 0.63 +0.3 450,584 - GFF2862 0.64 -0.3 450,584 - GFF2862 0.64 -1.2 450,584 - GFF2862 0.64 +1.0 450,589 + GFF2862 0.64 -0.8 450,589 + GFF2862 0.64 -0.0 450,590 - GFF2862 0.64 -0.7 450,779 - GFF2862 0.83 +0.1 451,105 - GFF2863 0.13 +0.2 451,204 - GFF2863 0.22 +0.1 451,263 + GFF2863 0.28 +1.1 451,263 + GFF2863 0.28 -0.4 451,264 - GFF2863 0.28 +0.1 451,644 + GFF2863 0.63 -1.1 451,644 + GFF2863 0.63 -0.7 451,645 - GFF2863 0.64 -0.2 451,645 - GFF2863 0.64 +0.6 451,645 - GFF2863 0.64 +0.5 451,758 + GFF2863 0.74 +0.0 451,903 - GFF2863 0.88 -1.6 451,903 - GFF2863 0.88 +0.2
Or see this region's nucleotide sequence