Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2796 and GFF2797 are separated by 103 nucleotides GFF2797 and GFF2798 overlap by 4 nucleotides
GFF2796 - FIG00931903: hypothetical protein, at 393,101 to 394,144
GFF2796
GFF2797 - FIG074102: hypothetical protein, at 394,248 to 395,138
GFF2797
GFF2798 - tRNA-guanine transglycosylase (EC 2.4.2.29), at 395,135 to 396,301
GFF2798
Position (kb) 394
395
396 Strain fitness (log2 ratio) -2
-1
0
1 at 393.608 kb on + strand, within GFF2796 at 393.722 kb on + strand, within GFF2796 at 393.722 kb on + strand, within GFF2796 at 393.723 kb on - strand, within GFF2796 at 393.723 kb on - strand, within GFF2796 at 393.723 kb on - strand, within GFF2796 at 393.800 kb on + strand, within GFF2796 at 393.800 kb on + strand, within GFF2796 at 393.801 kb on - strand, within GFF2796 at 393.801 kb on - strand, within GFF2796 at 393.801 kb on - strand, within GFF2796 at 393.810 kb on - strand, within GFF2796 at 393.810 kb on - strand, within GFF2796 at 393.810 kb on - strand, within GFF2796 at 393.818 kb on + strand, within GFF2796 at 393.818 kb on + strand, within GFF2796 at 393.819 kb on - strand, within GFF2796 at 393.819 kb on - strand, within GFF2796 at 393.881 kb on + strand, within GFF2796 at 393.882 kb on - strand, within GFF2796 at 393.882 kb on - strand, within GFF2796 at 393.944 kb on + strand, within GFF2796 at 393.944 kb on + strand, within GFF2796 at 393.944 kb on + strand, within GFF2796 at 393.945 kb on - strand, within GFF2796 at 394.104 kb on - strand at 394.109 kb on + strand at 394.110 kb on - strand at 394.110 kb on - strand at 394.195 kb on + strand at 394.196 kb on - strand at 394.753 kb on - strand, within GFF2797 at 394.776 kb on + strand, within GFF2797 at 394.776 kb on + strand, within GFF2797 at 394.776 kb on + strand, within GFF2797 at 394.777 kb on - strand, within GFF2797 at 394.777 kb on - strand, within GFF2797 at 394.777 kb on - strand, within GFF2797 at 394.777 kb on - strand, within GFF2797 at 394.974 kb on + strand, within GFF2797 at 394.974 kb on + strand, within GFF2797 at 394.974 kb on + strand, within GFF2797 at 394.974 kb on + strand, within GFF2797 at 394.974 kb on + strand, within GFF2797 at 394.974 kb on + strand, within GFF2797 at 394.974 kb on + strand, within GFF2797 at 394.974 kb on + strand, within GFF2797 at 394.974 kb on + strand, within GFF2797 at 394.974 kb on + strand, within GFF2797 at 394.975 kb on - strand, within GFF2797 at 394.975 kb on - strand, within GFF2797 at 394.975 kb on - strand, within GFF2797 at 395.025 kb on + strand, within GFF2797 at 395.026 kb on - strand, within GFF2797 at 395.040 kb on + strand, within GFF2797 at 395.040 kb on + strand, within GFF2797 at 395.041 kb on - strand, within GFF2797 at 395.041 kb on - strand, within GFF2797 at 395.041 kb on - strand, within GFF2797 at 395.136 kb on + strand at 395.232 kb on + strand at 395.232 kb on + strand at 395.232 kb on + strand at 395.233 kb on - strand at 395.233 kb on - strand at 395.233 kb on - strand at 395.233 kb on - strand at 395.235 kb on + strand at 395.235 kb on + strand at 395.236 kb on - strand at 395.236 kb on - strand at 395.236 kb on - strand at 395.236 kb on - strand at 395.236 kb on - strand at 395.559 kb on + strand, within GFF2798 at 395.560 kb on - strand, within GFF2798 at 395.856 kb on + strand, within GFF2798 at 395.857 kb on - strand, within GFF2798 at 395.857 kb on - strand, within GFF2798 at 396.042 kb on - strand, within GFF2798
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 393,608 + GFF2796 0.49 -1.3 393,722 + GFF2796 0.59 +0.7 393,722 + GFF2796 0.59 -0.1 393,723 - GFF2796 0.60 +1.5 393,723 - GFF2796 0.60 +0.7 393,723 - GFF2796 0.60 +0.2 393,800 + GFF2796 0.67 +0.5 393,800 + GFF2796 0.67 -0.3 393,801 - GFF2796 0.67 -0.1 393,801 - GFF2796 0.67 +0.9 393,801 - GFF2796 0.67 -1.8 393,810 - GFF2796 0.68 -0.0 393,810 - GFF2796 0.68 -2.2 393,810 - GFF2796 0.68 -2.2 393,818 + GFF2796 0.69 +0.5 393,818 + GFF2796 0.69 +0.3 393,819 - GFF2796 0.69 -0.2 393,819 - GFF2796 0.69 +0.3 393,881 + GFF2796 0.75 -1.5 393,882 - GFF2796 0.75 -0.5 393,882 - GFF2796 0.75 +0.5 393,944 + GFF2796 0.81 +0.6 393,944 + GFF2796 0.81 -1.9 393,944 + GFF2796 0.81 -0.8 393,945 - GFF2796 0.81 -0.0 394,104 - +0.6 394,109 + -0.6 394,110 - -0.4 394,110 - +0.1 394,195 + +1.4 394,196 - +0.5 394,753 - GFF2797 0.57 -0.2 394,776 + GFF2797 0.59 +0.5 394,776 + GFF2797 0.59 +1.0 394,776 + GFF2797 0.59 -0.5 394,777 - GFF2797 0.59 +0.3 394,777 - GFF2797 0.59 +0.5 394,777 - GFF2797 0.59 -0.2 394,777 - GFF2797 0.59 -0.4 394,974 + GFF2797 0.81 -0.2 394,974 + GFF2797 0.81 +0.3 394,974 + GFF2797 0.81 -0.3 394,974 + GFF2797 0.81 +0.5 394,974 + GFF2797 0.81 +0.3 394,974 + GFF2797 0.81 +0.1 394,974 + GFF2797 0.81 +0.0 394,974 + GFF2797 0.81 -0.1 394,974 + GFF2797 0.81 +0.3 394,974 + GFF2797 0.81 +0.1 394,975 - GFF2797 0.82 +0.2 394,975 - GFF2797 0.82 -0.3 394,975 - GFF2797 0.82 +0.1 395,025 + GFF2797 0.87 -0.0 395,026 - GFF2797 0.87 -0.4 395,040 + GFF2797 0.89 +0.3 395,040 + GFF2797 0.89 -0.2 395,041 - GFF2797 0.89 +1.0 395,041 - GFF2797 0.89 -0.4 395,041 - GFF2797 0.89 +0.5 395,136 + +0.0 395,232 + -0.8 395,232 + -0.5 395,232 + -0.4 395,233 - +0.2 395,233 - +0.5 395,233 - +0.1 395,233 - +0.5 395,235 + -0.2 395,235 + +0.2 395,236 - -0.6 395,236 - +0.2 395,236 - +0.4 395,236 - -0.4 395,236 - -1.1 395,559 + GFF2798 0.36 -0.6 395,560 - GFF2798 0.36 -0.4 395,856 + GFF2798 0.62 -0.5 395,857 - GFF2798 0.62 -0.6 395,857 - GFF2798 0.62 -0.7 396,042 - GFF2798 0.78 +0.5
Or see this region's nucleotide sequence