Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2603 and GFF2604 are separated by 8 nucleotides GFF2604 and GFF2605 are separated by 15 nucleotides GFF2605 and GFF2606 overlap by 4 nucleotides GFF2606 and GFF2607 are separated by 200 nucleotides
GFF2603 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 195,426 to 196,526
GFF2603
GFF2604 - Aspartate 1-decarboxylase (EC 4.1.1.11), at 196,535 to 196,885
GFF2604
GFF2605 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 196,901 to 197,224
GFF2605
GFF2606 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 197,221 to 198,645
GFF2606
GFF2607 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 198,846 to 200,534
GFF2607
Position (kb) 197
198
199 Strain fitness (log2 ratio) -2
-1
0
1 at 196.398 kb on + strand, within GFF2603 at 196.398 kb on + strand, within GFF2603 at 196.398 kb on + strand, within GFF2603 at 196.398 kb on - strand, within GFF2603 at 196.399 kb on - strand, within GFF2603 at 196.399 kb on - strand, within GFF2603 at 196.399 kb on - strand, within GFF2603 at 196.587 kb on - strand, within GFF2604 at 196.587 kb on - strand, within GFF2604 at 196.661 kb on + strand, within GFF2604 at 196.661 kb on + strand, within GFF2604 at 196.662 kb on - strand, within GFF2604 at 196.662 kb on - strand, within GFF2604 at 196.662 kb on - strand, within GFF2604 at 196.694 kb on + strand, within GFF2604 at 196.694 kb on + strand, within GFF2604 at 196.694 kb on + strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.790 kb on + strand, within GFF2604 at 196.911 kb on + strand at 196.912 kb on - strand at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 197.698 kb on + strand, within GFF2606 at 197.698 kb on + strand, within GFF2606 at 197.698 kb on + strand, within GFF2606 at 197.698 kb on + strand, within GFF2606 at 197.699 kb on - strand, within GFF2606 at 197.699 kb on - strand, within GFF2606 at 197.699 kb on - strand, within GFF2606 at 197.699 kb on - strand, within GFF2606 at 197.923 kb on + strand, within GFF2606 at 197.923 kb on + strand, within GFF2606 at 197.923 kb on + strand, within GFF2606 at 198.022 kb on + strand, within GFF2606 at 198.022 kb on + strand, within GFF2606 at 198.022 kb on + strand, within GFF2606 at 198.022 kb on + strand, within GFF2606 at 198.023 kb on - strand, within GFF2606 at 198.023 kb on - strand, within GFF2606 at 198.023 kb on - strand, within GFF2606 at 198.280 kb on + strand, within GFF2606 at 198.280 kb on + strand, within GFF2606 at 198.280 kb on + strand, within GFF2606 at 198.281 kb on - strand, within GFF2606 at 198.281 kb on - strand, within GFF2606 at 198.352 kb on + strand, within GFF2606 at 198.352 kb on + strand, within GFF2606 at 198.472 kb on + strand, within GFF2606 at 198.472 kb on + strand, within GFF2606 at 198.472 kb on + strand, within GFF2606 at 198.472 kb on + strand, within GFF2606 at 198.472 kb on + strand, within GFF2606 at 198.472 kb on + strand, within GFF2606 at 198.472 kb on + strand, within GFF2606 at 198.472 kb on + strand, within GFF2606 at 198.473 kb on - strand, within GFF2606 at 198.473 kb on - strand, within GFF2606 at 198.496 kb on + strand, within GFF2606 at 198.496 kb on + strand, within GFF2606 at 198.496 kb on + strand, within GFF2606 at 198.497 kb on - strand, within GFF2606 at 198.497 kb on - strand, within GFF2606 at 198.497 kb on - strand, within GFF2606 at 198.497 kb on - strand, within GFF2606 at 198.497 kb on - strand, within GFF2606 at 198.497 kb on - strand, within GFF2606 at 198.497 kb on - strand, within GFF2606 at 198.571 kb on + strand at 198.571 kb on + strand at 198.571 kb on + strand at 198.571 kb on + strand at 198.572 kb on - strand at 198.572 kb on - strand at 198.572 kb on - strand at 198.712 kb on + strand at 198.740 kb on + strand at 198.740 kb on + strand at 198.741 kb on - strand at 198.820 kb on + strand at 198.820 kb on + strand at 198.820 kb on + strand at 198.820 kb on + strand at 198.821 kb on - strand at 198.821 kb on - strand at 198.821 kb on - strand at 198.885 kb on + strand at 198.924 kb on + strand at 198.925 kb on - strand at 198.985 kb on - strand at 199.050 kb on + strand, within GFF2607 at 199.117 kb on - strand, within GFF2607 at 199.353 kb on + strand, within GFF2607 at 199.353 kb on + strand, within GFF2607 at 199.353 kb on + strand, within GFF2607 at 199.353 kb on + strand, within GFF2607 at 199.354 kb on - strand, within GFF2607 at 199.354 kb on - strand, within GFF2607 at 199.494 kb on + strand, within GFF2607 at 199.495 kb on - strand, within GFF2607
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 196,398 + GFF2603 0.88 -1.6 196,398 + GFF2603 0.88 -0.1 196,398 + GFF2603 0.88 +0.7 196,398 - GFF2603 0.88 -0.4 196,399 - GFF2603 0.88 +0.3 196,399 - GFF2603 0.88 +0.1 196,399 - GFF2603 0.88 -0.5 196,587 - GFF2604 0.15 -0.8 196,587 - GFF2604 0.15 -0.9 196,661 + GFF2604 0.36 -0.4 196,661 + GFF2604 0.36 -0.0 196,662 - GFF2604 0.36 +1.1 196,662 - GFF2604 0.36 -0.1 196,662 - GFF2604 0.36 -0.5 196,694 + GFF2604 0.45 -0.1 196,694 + GFF2604 0.45 +0.8 196,694 + GFF2604 0.45 -0.0 196,695 - GFF2604 0.46 -0.4 196,695 - GFF2604 0.46 +0.1 196,695 - GFF2604 0.46 -1.2 196,695 - GFF2604 0.46 +0.6 196,790 + GFF2604 0.73 -0.1 196,911 + +0.2 196,912 - +0.6 196,955 + GFF2605 0.17 -1.0 196,955 + GFF2605 0.17 -0.6 196,955 + GFF2605 0.17 -0.3 196,955 + GFF2605 0.17 -0.5 196,955 + GFF2605 0.17 -0.7 196,956 - GFF2605 0.17 -0.9 196,956 - GFF2605 0.17 -0.1 196,956 - GFF2605 0.17 -0.3 196,956 - GFF2605 0.17 -2.4 196,956 - GFF2605 0.17 -0.4 196,956 - GFF2605 0.17 -0.5 196,956 - GFF2605 0.17 +0.1 196,956 - GFF2605 0.17 +0.1 196,956 - GFF2605 0.17 -0.1 197,698 + GFF2606 0.33 -0.0 197,698 + GFF2606 0.33 +0.4 197,698 + GFF2606 0.33 -0.5 197,698 + GFF2606 0.33 -0.8 197,699 - GFF2606 0.34 -0.3 197,699 - GFF2606 0.34 -0.4 197,699 - GFF2606 0.34 -1.9 197,699 - GFF2606 0.34 -0.9 197,923 + GFF2606 0.49 +0.6 197,923 + GFF2606 0.49 -0.1 197,923 + GFF2606 0.49 -1.0 198,022 + GFF2606 0.56 -1.4 198,022 + GFF2606 0.56 -0.0 198,022 + GFF2606 0.56 +0.2 198,022 + GFF2606 0.56 -0.5 198,023 - GFF2606 0.56 -0.0 198,023 - GFF2606 0.56 +0.4 198,023 - GFF2606 0.56 -1.6 198,280 + GFF2606 0.74 +0.2 198,280 + GFF2606 0.74 +0.1 198,280 + GFF2606 0.74 -0.8 198,281 - GFF2606 0.74 -1.8 198,281 - GFF2606 0.74 +0.1 198,352 + GFF2606 0.79 +0.7 198,352 + GFF2606 0.79 -0.6 198,472 + GFF2606 0.88 -0.4 198,472 + GFF2606 0.88 -0.3 198,472 + GFF2606 0.88 -0.7 198,472 + GFF2606 0.88 -0.5 198,472 + GFF2606 0.88 -1.0 198,472 + GFF2606 0.88 -0.1 198,472 + GFF2606 0.88 -0.2 198,472 + GFF2606 0.88 -0.2 198,473 - GFF2606 0.88 -1.5 198,473 - GFF2606 0.88 -1.2 198,496 + GFF2606 0.89 -1.3 198,496 + GFF2606 0.89 -1.0 198,496 + GFF2606 0.89 +0.4 198,497 - GFF2606 0.90 -1.2 198,497 - GFF2606 0.90 +0.1 198,497 - GFF2606 0.90 -0.1 198,497 - GFF2606 0.90 -0.5 198,497 - GFF2606 0.90 -0.0 198,497 - GFF2606 0.90 -0.5 198,497 - GFF2606 0.90 -0.4 198,571 + -0.4 198,571 + -0.3 198,571 + -1.4 198,571 + -0.8 198,572 - -0.1 198,572 - +0.1 198,572 - +0.4 198,712 + +0.7 198,740 + +0.3 198,740 + +0.3 198,741 - +1.0 198,820 + -0.6 198,820 + +0.0 198,820 + -0.2 198,820 + -0.1 198,821 - +0.7 198,821 - +0.5 198,821 - -0.1 198,885 + -0.3 198,924 + -0.8 198,925 - +0.0 198,985 - -0.9 199,050 + GFF2607 0.12 -0.7 199,117 - GFF2607 0.16 -0.5 199,353 + GFF2607 0.30 +0.0 199,353 + GFF2607 0.30 +0.6 199,353 + GFF2607 0.30 -0.4 199,353 + GFF2607 0.30 -1.2 199,354 - GFF2607 0.30 -0.5 199,354 - GFF2607 0.30 +0.6 199,494 + GFF2607 0.38 +0.6 199,495 - GFF2607 0.38 -0.6
Or see this region's nucleotide sequence