Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2542

Experiment: Ying_OrganicAcid7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2540 and GFF2541 are separated by 13 nucleotidesGFF2541 and GFF2542 overlap by 4 nucleotidesGFF2542 and GFF2543 overlap by 4 nucleotidesGFF2543 and GFF2544 are separated by 17 nucleotides GFF2540 - Tyrosine-protein kinase EpsD (EC 2.7.10.2), at 126,550 to 128,937 GFF2540 GFF2541 - GumB protein, at 128,951 to 129,688 GFF2541 GFF2542 - Colanic acid biosysnthesis glycosyl transferase WcaI, at 129,685 to 130,968 GFF2542 GFF2543 - hypothetical protein, at 130,965 to 131,846 GFF2543 GFF2544 - Beta 1,4 glucosyltransferase, at 131,864 to 132,847 GFF2544 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1at 128.718 kb on - strandat 128.789 kb on + strandat 128.876 kb on + strandat 128.909 kb on + strandat 129.099 kb on + strand, within GFF2541at 129.166 kb on - strand, within GFF2541at 129.229 kb on - strand, within GFF2541at 129.319 kb on - strand, within GFF2541at 129.319 kb on - strand, within GFF2541at 129.319 kb on - strand, within GFF2541at 129.319 kb on - strand, within GFF2541at 129.331 kb on - strand, within GFF2541at 129.331 kb on - strand, within GFF2541at 130.547 kb on - strand, within GFF2542at 130.548 kb on - strand, within GFF2542at 130.910 kb on + strandat 130.911 kb on - strandat 130.953 kb on - strandat 130.953 kb on - strandat 131.083 kb on + strand, within GFF2543at 131.083 kb on + strand, within GFF2543at 131.084 kb on - strand, within GFF2543at 131.117 kb on - strand, within GFF2543at 131.117 kb on - strand, within GFF2543at 131.117 kb on - strand, within GFF2543at 131.185 kb on + strand, within GFF2543at 131.186 kb on - strand, within GFF2543at 131.186 kb on - strand, within GFF2543at 131.263 kb on + strand, within GFF2543at 131.263 kb on + strand, within GFF2543at 131.264 kb on - strand, within GFF2543at 131.264 kb on - strand, within GFF2543at 131.272 kb on + strand, within GFF2543at 131.355 kb on + strand, within GFF2543at 131.377 kb on + strand, within GFF2543at 131.378 kb on - strand, within GFF2543at 131.587 kb on + strand, within GFF2543at 131.588 kb on - strand, within GFF2543at 131.617 kb on + strand, within GFF2543at 131.629 kb on + strand, within GFF2543at 131.629 kb on + strand, within GFF2543at 131.630 kb on - strand, within GFF2543at 131.633 kb on - strand, within GFF2543at 131.633 kb on - strand, within GFF2543at 131.633 kb on - strand, within GFF2543

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
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128,718 - +0.3
128,789 + -0.0
128,876 + +0.7
128,909 + -0.4
129,099 + GFF2541 0.20 +0.5
129,166 - GFF2541 0.29 +0.1
129,229 - GFF2541 0.38 +0.9
129,319 - GFF2541 0.50 -0.2
129,319 - GFF2541 0.50 +0.4
129,319 - GFF2541 0.50 +0.5
129,319 - GFF2541 0.50 -0.3
129,331 - GFF2541 0.51 -1.9
129,331 - GFF2541 0.51 -0.6
130,547 - GFF2542 0.67 +0.0
130,548 - GFF2542 0.67 +0.7
130,910 + -0.1
130,911 - +0.2
130,953 - +0.4
130,953 - -0.0
131,083 + GFF2543 0.13 +0.7
131,083 + GFF2543 0.13 -0.5
131,084 - GFF2543 0.13 -0.1
131,117 - GFF2543 0.17 -0.2
131,117 - GFF2543 0.17 +0.3
131,117 - GFF2543 0.17 -0.6
131,185 + GFF2543 0.25 +0.7
131,186 - GFF2543 0.25 +0.1
131,186 - GFF2543 0.25 +0.2
131,263 + GFF2543 0.34 +0.1
131,263 + GFF2543 0.34 -0.5
131,264 - GFF2543 0.34 +0.4
131,264 - GFF2543 0.34 +0.6
131,272 + GFF2543 0.35 +0.1
131,355 + GFF2543 0.44 +0.8
131,377 + GFF2543 0.47 +0.1
131,378 - GFF2543 0.47 -0.2
131,587 + GFF2543 0.71 +0.2
131,588 - GFF2543 0.71 +0.4
131,617 + GFF2543 0.74 -0.7
131,629 + GFF2543 0.75 +0.6
131,629 + GFF2543 0.75 +0.7
131,630 - GFF2543 0.75 -0.8
131,633 - GFF2543 0.76 -0.2
131,633 - GFF2543 0.76 +0.3
131,633 - GFF2543 0.76 -0.6

Or see this region's nucleotide sequence