Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2536

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
121,218	+				-0.6
121,218	+				-0.6
121,218	+				-0.6
121,218	+				-0.2
121,218	+				+0.5
121,219	-				-0.4
121,219	-				+0.2
121,219	-				-0.2
121,219	-				-0.3
121,219	-				-0.4
121,371	-		GFF2535	0.15	+0.4
121,371	-		GFF2535	0.15	+0.0
121,371	-		GFF2535	0.15	+0.7
121,625	+		GFF2535	0.46	+0.3
121,625	+		GFF2535	0.46	+1.1
121,626	-		GFF2535	0.47	-0.1
121,626	-		GFF2535	0.47	-0.3
121,724	+		GFF2535	0.59	-0.2
121,748	+		GFF2535	0.62	+1.2
121,749	-		GFF2535	0.62	-0.2
121,796	+		GFF2535	0.68	+1.2
121,796	+		GFF2535	0.68	-0.6
121,797	-		GFF2535	0.68	-0.2
121,797	-		GFF2535	0.68	-0.7
121,797	-		GFF2535	0.68	-0.5
122,635	+		GFF2536	0.27	+1.2
122,636	-		GFF2536	0.27	+0.1
123,041	-		GFF2536	0.47	+0.4
123,041	-		GFF2536	0.47	+0.5
123,142	+		GFF2536	0.52	+1.6
123,196	+		GFF2536	0.54	+1.7
123,451	+		GFF2536	0.66	+1.9
124,133	+				-1.2
124,133	+				+0.6
124,134	-				-0.9
124,134	-				+0.4
124,134	-				-0.5
124,134	-				-0.9
124,173	+				+0.7
124,251	+		GFF2537	0.17	+0.6
124,251	+		GFF2537	0.17	+1.2
124,453	+		GFF2537	0.49	+0.3
125,024	+				-1.7
125,024	+				-0.6
125,025	-				-0.4
125,062	+				-1.2
125,063	-				-1.1
125,063	-				+0.2