Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2478

Experiment: Ying_OrganicAcid7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2476 and GFF2477 are separated by 61 nucleotidesGFF2477 and GFF2478 overlap by 4 nucleotidesGFF2478 and GFF2479 overlap by 4 nucleotidesGFF2479 and GFF2480 overlap by 4 nucleotides GFF2476 - Periplasmic hemin-binding protein, at 59,546 to 60,430 GFF2476 GFF2477 - hypothetical protein, at 60,492 to 60,989 GFF2477 GFF2478 - Hemin ABC transporter, permease protein, at 60,986 to 62,068 GFF2478 GFF2479 - ABC-type hemin transport system, ATPase component, at 62,065 to 63,012 GFF2479 GFF2480 - hypothetical protein, at 63,009 to 63,431 GFF2480 Position (kb) 60 61 62 63Strain fitness (log2 ratio) -1 0 1at 61.116 kb on - strand, within GFF2478at 61.466 kb on + strand, within GFF2478at 61.466 kb on + strand, within GFF2478at 61.466 kb on + strand, within GFF2478at 61.467 kb on - strand, within GFF2478at 61.467 kb on - strand, within GFF2478at 61.467 kb on - strand, within GFF2478at 61.467 kb on - strand, within GFF2478at 62.822 kb on - strand, within GFF2479

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
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61,116 - GFF2478 0.12 +1.3
61,466 + GFF2478 0.44 -0.9
61,466 + GFF2478 0.44 -0.0
61,466 + GFF2478 0.44 +0.2
61,467 - GFF2478 0.44 -0.1
61,467 - GFF2478 0.44 +0.3
61,467 - GFF2478 0.44 -0.1
61,467 - GFF2478 0.44 +0.2
62,822 - GFF2479 0.80 -1.2

Or see this region's nucleotide sequence