Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2472 and GFF2473 are separated by 8 nucleotides GFF2473 and GFF2474 are separated by 37 nucleotides
GFF2472 - TonB-dependent hemin , ferrichrome receptor, at 55,486 to 57,672
GFF2472
GFF2473 - hypothetical protein, at 57,681 to 58,007
GFF2473
GFF2474 - Hemin transport protein HmuS, at 58,045 to 59,115
GFF2474
Position (kb) 57
58
59 Strain fitness (log2 ratio) -1
0
1 at 56.696 kb on - strand, within GFF2472 at 56.704 kb on + strand, within GFF2472 at 56.704 kb on + strand, within GFF2472 at 56.806 kb on + strand, within GFF2472 at 56.807 kb on - strand, within GFF2472 at 56.845 kb on + strand, within GFF2472 at 56.986 kb on + strand, within GFF2472 at 56.987 kb on - strand, within GFF2472 at 56.987 kb on - strand, within GFF2472 at 56.987 kb on - strand, within GFF2472 at 56.987 kb on - strand, within GFF2472 at 56.987 kb on - strand, within GFF2472 at 57.124 kb on + strand, within GFF2472 at 57.125 kb on - strand, within GFF2472 at 57.125 kb on - strand, within GFF2472 at 57.193 kb on + strand, within GFF2472 at 57.193 kb on + strand, within GFF2472 at 57.193 kb on + strand, within GFF2472 at 57.442 kb on + strand, within GFF2472 at 57.443 kb on - strand, within GFF2472 at 57.478 kb on + strand at 57.478 kb on + strand at 57.479 kb on - strand at 57.479 kb on - strand at 57.565 kb on + strand at 57.566 kb on - strand at 57.623 kb on - strand at 57.670 kb on + strand at 57.670 kb on + strand at 57.723 kb on + strand, within GFF2473 at 57.723 kb on + strand, within GFF2473 at 57.781 kb on - strand, within GFF2473 at 57.853 kb on + strand, within GFF2473 at 58.297 kb on + strand, within GFF2474 at 58.297 kb on + strand, within GFF2474 at 58.480 kb on + strand, within GFF2474 at 58.480 kb on + strand, within GFF2474 at 58.481 kb on - strand, within GFF2474 at 58.481 kb on - strand, within GFF2474 at 58.723 kb on + strand, within GFF2474 at 58.723 kb on + strand, within GFF2474 at 58.724 kb on - strand, within GFF2474
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 56,696 - GFF2472 0.55 +0.8 56,704 + GFF2472 0.56 +0.1 56,704 + GFF2472 0.56 -0.1 56,806 + GFF2472 0.60 +0.1 56,807 - GFF2472 0.60 -1.0 56,845 + GFF2472 0.62 -0.1 56,986 + GFF2472 0.69 -0.1 56,987 - GFF2472 0.69 +1.1 56,987 - GFF2472 0.69 +0.2 56,987 - GFF2472 0.69 -0.0 56,987 - GFF2472 0.69 -0.9 56,987 - GFF2472 0.69 -0.4 57,124 + GFF2472 0.75 +0.3 57,125 - GFF2472 0.75 +0.1 57,125 - GFF2472 0.75 -0.1 57,193 + GFF2472 0.78 +1.0 57,193 + GFF2472 0.78 -0.2 57,193 + GFF2472 0.78 +0.6 57,442 + GFF2472 0.89 -0.7 57,443 - GFF2472 0.89 +0.4 57,478 + +0.0 57,478 + -0.6 57,479 - -0.3 57,479 - -0.2 57,565 + -0.5 57,566 - +1.7 57,623 - -0.4 57,670 + -0.0 57,670 + +0.2 57,723 + GFF2473 0.13 +0.3 57,723 + GFF2473 0.13 +1.0 57,781 - GFF2473 0.31 -0.3 57,853 + GFF2473 0.53 +0.2 58,297 + GFF2474 0.24 -0.8 58,297 + GFF2474 0.24 +0.9 58,480 + GFF2474 0.41 +1.1 58,480 + GFF2474 0.41 -0.3 58,481 - GFF2474 0.41 -0.6 58,481 - GFF2474 0.41 -0.2 58,723 + GFF2474 0.63 +0.3 58,723 + GFF2474 0.63 +0.6 58,724 - GFF2474 0.63 -0.4
Or see this region's nucleotide sequence