Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2147

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
1,036,280	+		GFF2145	0.88	+1.3
1,036,490	+				+0.0
1,036,777	-		GFF2146	0.44	+0.1
1,036,777	-		GFF2146	0.44	+1.1
1,036,815	+		GFF2146	0.54	+1.3
1,036,816	-		GFF2146	0.54	-0.3
1,036,818	+		GFF2146	0.55	-1.1
1,036,818	+		GFF2146	0.55	+0.6
1,036,818	+		GFF2146	0.55	-0.1
1,036,818	+		GFF2146	0.55	+0.4
1,036,819	-		GFF2146	0.55	-0.1
1,036,819	-		GFF2146	0.55	+0.0
1,036,890	+		GFF2146	0.73	+0.3
1,036,890	+		GFF2146	0.73	-2.0
1,036,891	-		GFF2146	0.73	+0.5
1,037,108	+				+0.1
1,037,109	-				-1.2
1,038,545	+				-0.2
1,038,545	+				-1.2
1,038,545	+				-0.5
1,038,545	+				-0.1
1,038,545	+				-0.6
1,038,545	+				+0.4
1,038,546	-				+0.5
1,038,668	+		GFF2148	0.10	-0.4
1,038,668	+		GFF2148	0.10	-0.5
1,038,668	+		GFF2148	0.10	-0.1
1,038,669	-		GFF2148	0.10	+0.6
1,038,669	-		GFF2148	0.10	+0.9
1,038,672	-		GFF2148	0.11	-0.1
1,039,379	+		GFF2148	0.50	-0.7