Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2143

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
1,030,866	-		GFF2141	0.13	+0.3
1,031,330	+		GFF2141	0.63	+0.7
1,031,330	+		GFF2141	0.63	+0.4
1,031,603	+				+0.7
1,031,603	+				-0.2
1,031,603	+				+0.4
1,031,604	-				+0.3
1,031,604	-				-0.4
1,031,604	-				-0.1
1,031,604	-				-0.5
1,031,657	+				-0.4
1,031,658	-				-0.1
1,031,658	-				+0.5
1,031,724	-				+0.3
1,031,726	-				+0.6
1,031,758	+		GFF2142	0.24	+1.1
1,031,784	+		GFF2142	0.41	+1.5
1,031,784	+		GFF2142	0.41	+1.1
1,031,784	+		GFF2142	0.41	+1.2
1,031,784	+		GFF2142	0.41	+1.0
1,031,784	+		GFF2142	0.41	+1.2
1,031,784	+		GFF2142	0.41	-0.1
1,031,785	-		GFF2142	0.42	+0.8
1,032,385	+		GFF2143	0.44	-1.2
1,032,871	+		GFF2143	0.82	+0.3
1,032,958	+		GFF2143	0.89	+0.3
1,032,958	+		GFF2143	0.89	+0.8
1,032,959	-		GFF2143	0.89	+0.4
1,033,219	-				-0.2
1,033,293	+		GFF2144	0.15	+0.6
1,033,308	+		GFF2144	0.17	-0.1
1,033,404	+		GFF2144	0.28	+0.6
1,033,582	-		GFF2144	0.48	-0.2
1,033,725	+		GFF2144	0.64	-0.1
1,033,726	-		GFF2144	0.64	-0.7
1,033,962	+				-1.0
1,033,962	+				-0.2