Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2081

Experiment: Ying_OrganicAcid7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2080 and GFF2081 are separated by 78 nucleotidesGFF2081 and GFF2082 are separated by 268 nucleotidesGFF2082 and GFF2083 are separated by 134 nucleotides GFF2080 - FIG00956879: hypothetical protein, at 966,986 to 967,963 GFF2080 GFF2081 - ThiJ/PfpI family protein, at 968,042 to 968,734 GFF2081 GFF2082 - Mercuric resistance operon regulatory protein, at 969,003 to 969,440 GFF2082 GFF2083 - cellular communication/signal transduction, at 969,575 to 969,901 GFF2083 Position (kb) 968 969Strain fitness (log2 ratio) -2 -1 0 1 2at 967.074 kb on + strandat 967.074 kb on + strandat 967.074 kb on + strandat 967.075 kb on - strandat 967.161 kb on + strand, within GFF2080at 967.198 kb on + strand, within GFF2080at 967.198 kb on + strand, within GFF2080at 967.204 kb on + strand, within GFF2080at 967.204 kb on + strand, within GFF2080at 967.205 kb on - strand, within GFF2080at 967.359 kb on + strand, within GFF2080at 967.359 kb on + strand, within GFF2080at 967.359 kb on + strand, within GFF2080at 967.360 kb on - strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.412 kb on + strand, within GFF2080at 967.413 kb on - strand, within GFF2080at 967.413 kb on - strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.416 kb on + strand, within GFF2080at 967.417 kb on - strand, within GFF2080at 967.417 kb on - strand, within GFF2080at 967.417 kb on - strand, within GFF2080at 967.518 kb on + strand, within GFF2080at 967.518 kb on + strand, within GFF2080at 967.519 kb on - strand, within GFF2080at 967.519 kb on - strand, within GFF2080at 967.519 kb on - strand, within GFF2080at 967.519 kb on - strand, within GFF2080at 967.536 kb on + strand, within GFF2080at 967.537 kb on - strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.542 kb on + strand, within GFF2080at 967.546 kb on + strand, within GFF2080at 967.547 kb on - strand, within GFF2080at 967.547 kb on - strand, within GFF2080at 967.547 kb on - strand, within GFF2080at 967.547 kb on - strand, within GFF2080at 967.548 kb on + strand, within GFF2080at 967.548 kb on + strand, within GFF2080at 967.548 kb on + strand, within GFF2080at 967.548 kb on + strand, within GFF2080at 967.549 kb on - strand, within GFF2080at 967.549 kb on - strand, within GFF2080at 967.549 kb on - strand, within GFF2080at 967.549 kb on - strand, within GFF2080at 967.701 kb on + strand, within GFF2080at 967.818 kb on + strand, within GFF2080at 967.819 kb on - strand, within GFF2080at 967.969 kb on + strandat 967.969 kb on + strandat 967.969 kb on + strandat 967.970 kb on - strandat 968.043 kb on + strandat 968.044 kb on - strandat 968.187 kb on + strand, within GFF2081at 968.187 kb on + strand, within GFF2081at 968.188 kb on - strand, within GFF2081at 968.188 kb on - strand, within GFF2081at 968.382 kb on + strand, within GFF2081at 968.382 kb on + strand, within GFF2081at 968.382 kb on + strand, within GFF2081at 968.382 kb on + strand, within GFF2081at 968.382 kb on + strand, within GFF2081at 968.382 kb on + strand, within GFF2081at 968.382 kb on + strand, within GFF2081at 968.382 kb on + strand, within GFF2081at 968.383 kb on - strand, within GFF2081at 968.383 kb on - strand, within GFF2081at 968.383 kb on - strand, within GFF2081at 968.457 kb on + strand, within GFF2081at 968.457 kb on + strand, within GFF2081at 968.457 kb on + strand, within GFF2081at 968.457 kb on + strand, within GFF2081at 968.458 kb on - strand, within GFF2081at 968.458 kb on - strand, within GFF2081at 968.458 kb on - strand, within GFF2081at 968.469 kb on + strand, within GFF2081at 968.565 kb on + strand, within GFF2081at 968.576 kb on + strand, within GFF2081at 968.577 kb on - strand, within GFF2081at 968.577 kb on - strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.651 kb on + strand, within GFF2081at 968.652 kb on - strand, within GFF2081at 968.652 kb on - strand, within GFF2081at 968.652 kb on - strand, within GFF2081at 968.652 kb on - strand, within GFF2081at 968.652 kb on - strand, within GFF2081at 968.652 kb on - strand, within GFF2081at 968.652 kb on - strand, within GFF2081at 968.712 kb on + strandat 968.756 kb on + strandat 968.987 kb on + strandat 969.060 kb on + strand, within GFF2082at 969.060 kb on + strand, within GFF2082at 969.060 kb on + strand, within GFF2082at 969.060 kb on + strand, within GFF2082at 969.061 kb on - strand, within GFF2082at 969.061 kb on - strand, within GFF2082at 969.061 kb on - strand, within GFF2082at 969.061 kb on - strand, within GFF2082at 969.385 kb on + strand, within GFF2082at 969.385 kb on + strand, within GFF2082at 969.386 kb on - strand, within GFF2082at 969.386 kb on - strand, within GFF2082at 969.394 kb on + strand, within GFF2082at 969.395 kb on - strand, within GFF2082at 969.395 kb on - strand, within GFF2082at 969.395 kb on - strand, within GFF2082at 969.395 kb on - strand, within GFF2082at 969.395 kb on - strand, within GFF2082at 969.395 kb on - strand, within GFF2082at 969.395 kb on - strand, within GFF2082at 969.444 kb on + strandat 969.526 kb on + strandat 969.536 kb on + strandat 969.536 kb on + strandat 969.537 kb on - strandat 969.537 kb on - strandat 969.549 kb on + strandat 969.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
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967,074 + +0.0
967,074 + +0.2
967,074 + +0.2
967,075 - +0.2
967,161 + GFF2080 0.18 +0.1
967,198 + GFF2080 0.22 +1.0
967,198 + GFF2080 0.22 +0.5
967,204 + GFF2080 0.22 -0.5
967,204 + GFF2080 0.22 +0.3
967,205 - GFF2080 0.22 +0.5
967,359 + GFF2080 0.38 -0.3
967,359 + GFF2080 0.38 +0.1
967,359 + GFF2080 0.38 +0.8
967,360 - GFF2080 0.38 +0.3
967,412 + GFF2080 0.44 +0.6
967,412 + GFF2080 0.44 +0.5
967,412 + GFF2080 0.44 +0.2
967,412 + GFF2080 0.44 +1.0
967,412 + GFF2080 0.44 +0.7
967,412 + GFF2080 0.44 +0.5
967,413 - GFF2080 0.44 +0.1
967,413 - GFF2080 0.44 +0.0
967,416 + GFF2080 0.44 +0.3
967,416 + GFF2080 0.44 +0.2
967,416 + GFF2080 0.44 +0.2
967,416 + GFF2080 0.44 +0.2
967,416 + GFF2080 0.44 -0.4
967,416 + GFF2080 0.44 +0.1
967,416 + GFF2080 0.44 -0.2
967,417 - GFF2080 0.44 -2.1
967,417 - GFF2080 0.44 -0.1
967,417 - GFF2080 0.44 -0.1
967,518 + GFF2080 0.54 -0.1
967,518 + GFF2080 0.54 -0.2
967,519 - GFF2080 0.54 -0.2
967,519 - GFF2080 0.54 +0.8
967,519 - GFF2080 0.54 -0.3
967,519 - GFF2080 0.54 -0.0
967,536 + GFF2080 0.56 +0.1
967,537 - GFF2080 0.56 -0.1
967,542 + GFF2080 0.57 +0.4
967,542 + GFF2080 0.57 +0.2
967,542 + GFF2080 0.57 -0.1
967,542 + GFF2080 0.57 +0.3
967,542 + GFF2080 0.57 -0.9
967,542 + GFF2080 0.57 -0.1
967,546 + GFF2080 0.57 +1.1
967,547 - GFF2080 0.57 +0.2
967,547 - GFF2080 0.57 -0.5
967,547 - GFF2080 0.57 +0.6
967,547 - GFF2080 0.57 -1.2
967,548 + GFF2080 0.57 +0.8
967,548 + GFF2080 0.57 -0.4
967,548 + GFF2080 0.57 -0.8
967,548 + GFF2080 0.57 +0.5
967,549 - GFF2080 0.58 +0.0
967,549 - GFF2080 0.58 -0.4
967,549 - GFF2080 0.58 +0.2
967,549 - GFF2080 0.58 -0.1
967,701 + GFF2080 0.73 +0.9
967,818 + GFF2080 0.85 +0.0
967,819 - GFF2080 0.85 -0.2
967,969 + -0.2
967,969 + -0.7
967,969 + -1.0
967,970 - +0.2
968,043 + -0.3
968,044 - +0.2
968,187 + GFF2081 0.21 -1.4
968,187 + GFF2081 0.21 -0.4
968,188 - GFF2081 0.21 -1.9
968,188 - GFF2081 0.21 -0.1
968,382 + GFF2081 0.49 +0.3
968,382 + GFF2081 0.49 -0.7
968,382 + GFF2081 0.49 +1.9
968,382 + GFF2081 0.49 +0.5
968,382 + GFF2081 0.49 -0.1
968,382 + GFF2081 0.49 -1.1
968,382 + GFF2081 0.49 +0.5
968,382 + GFF2081 0.49 +0.0
968,383 - GFF2081 0.49 -1.2
968,383 - GFF2081 0.49 -0.5
968,383 - GFF2081 0.49 -0.7
968,457 + GFF2081 0.60 +0.6
968,457 + GFF2081 0.60 -0.9
968,457 + GFF2081 0.60 -0.7
968,457 + GFF2081 0.60 +0.6
968,458 - GFF2081 0.60 -1.1
968,458 - GFF2081 0.60 -0.4
968,458 - GFF2081 0.60 +0.6
968,469 + GFF2081 0.62 -0.2
968,565 + GFF2081 0.75 +1.3
968,576 + GFF2081 0.77 -0.2
968,577 - GFF2081 0.77 +0.3
968,577 - GFF2081 0.77 -0.1
968,651 + GFF2081 0.88 -0.2
968,651 + GFF2081 0.88 -0.9
968,651 + GFF2081 0.88 +0.0
968,651 + GFF2081 0.88 -1.4
968,651 + GFF2081 0.88 +1.6
968,651 + GFF2081 0.88 -0.4
968,651 + GFF2081 0.88 -0.6
968,651 + GFF2081 0.88 -0.2
968,651 + GFF2081 0.88 -0.2
968,651 + GFF2081 0.88 -0.5
968,651 + GFF2081 0.88 +1.6
968,652 - GFF2081 0.88 -0.2
968,652 - GFF2081 0.88 -0.9
968,652 - GFF2081 0.88 -0.4
968,652 - GFF2081 0.88 -0.2
968,652 - GFF2081 0.88 -0.2
968,652 - GFF2081 0.88 -0.2
968,652 - GFF2081 0.88 +0.0
968,712 + +0.0
968,756 + -0.4
968,987 + +0.1
969,060 + GFF2082 0.13 -0.1
969,060 + GFF2082 0.13 -0.2
969,060 + GFF2082 0.13 -0.3
969,060 + GFF2082 0.13 +0.2
969,061 - GFF2082 0.13 -0.2
969,061 - GFF2082 0.13 -0.5
969,061 - GFF2082 0.13 +0.6
969,061 - GFF2082 0.13 +1.0
969,385 + GFF2082 0.87 -0.2
969,385 + GFF2082 0.87 -0.2
969,386 - GFF2082 0.87 -0.1
969,386 - GFF2082 0.87 +0.0
969,394 + GFF2082 0.89 -0.1
969,395 - GFF2082 0.89 -0.1
969,395 - GFF2082 0.89 +0.6
969,395 - GFF2082 0.89 -1.7
969,395 - GFF2082 0.89 +0.1
969,395 - GFF2082 0.89 +0.7
969,395 - GFF2082 0.89 +0.7
969,395 - GFF2082 0.89 +0.4
969,444 + -0.5
969,526 + -0.1
969,536 + +0.1
969,536 + -0.1
969,537 - +0.1
969,537 - -0.2
969,549 + -0.2
969,550 - +1.3

Or see this region's nucleotide sequence