Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1924 and GFF1925 are separated by 82 nucleotides GFF1925 and GFF1926 are separated by 34 nucleotides GFF1926 and GFF1927 are separated by 119 nucleotides GFF1927 and GFF1928 are separated by 12 nucleotides
GFF1924 - MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein, at 798,060 to 799,595
GFF1924
GFF1925 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 799,678 to 801,117
GFF1925
GFF1926 - putative membrane protein, at 801,152 to 801,550
GFF1926
GFF1927 - hypothetical protein, at 801,670 to 801,894
GFF1927
GFF1928 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 801,907 to 804,603
GFF1928
Position (kb) 799
800
801
802 Strain fitness (log2 ratio) -1
0
1 at 799.200 kb on + strand, within GFF1924 at 799.630 kb on + strand at 799.630 kb on + strand at 799.631 kb on - strand at 799.631 kb on - strand at 799.684 kb on + strand at 799.684 kb on + strand at 799.684 kb on + strand at 799.685 kb on - strand at 799.685 kb on - strand at 800.042 kb on - strand, within GFF1925 at 800.293 kb on + strand, within GFF1925 at 800.294 kb on - strand, within GFF1925 at 800.320 kb on + strand, within GFF1925 at 800.899 kb on + strand, within GFF1925 at 800.914 kb on + strand, within GFF1925 at 800.914 kb on + strand, within GFF1925 at 801.079 kb on + strand at 801.079 kb on + strand at 801.080 kb on - strand at 801.251 kb on - strand, within GFF1926 at 801.253 kb on - strand, within GFF1926 at 801.375 kb on + strand, within GFF1926 at 801.375 kb on + strand, within GFF1926 at 801.375 kb on + strand, within GFF1926 at 801.375 kb on + strand, within GFF1926 at 801.375 kb on + strand, within GFF1926 at 801.384 kb on + strand, within GFF1926 at 801.384 kb on + strand, within GFF1926 at 801.384 kb on + strand, within GFF1926 at 801.385 kb on - strand, within GFF1926 at 801.385 kb on - strand, within GFF1926 at 801.385 kb on - strand, within GFF1926 at 801.542 kb on + strand at 801.542 kb on + strand at 801.542 kb on + strand at 801.542 kb on + strand at 801.542 kb on + strand at 801.543 kb on - strand at 801.543 kb on - strand at 801.543 kb on - strand at 801.565 kb on - strand at 801.672 kb on - strand at 801.672 kb on - strand at 801.692 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 799,200 + GFF1924 0.74 +0.8 799,630 + -0.1 799,630 + -0.1 799,631 - -0.1 799,631 - -0.6 799,684 + +1.6 799,684 + -0.0 799,684 + +0.1 799,685 - +0.1 799,685 - -0.4 800,042 - GFF1925 0.25 -0.6 800,293 + GFF1925 0.43 -0.8 800,294 - GFF1925 0.43 -0.5 800,320 + GFF1925 0.45 +0.1 800,899 + GFF1925 0.85 +0.5 800,914 + GFF1925 0.86 +0.3 800,914 + GFF1925 0.86 +0.3 801,079 + +0.1 801,079 + -0.4 801,080 - +0.4 801,251 - GFF1926 0.25 +0.2 801,253 - GFF1926 0.25 -0.8 801,375 + GFF1926 0.56 -0.0 801,375 + GFF1926 0.56 +0.3 801,375 + GFF1926 0.56 +0.3 801,375 + GFF1926 0.56 +0.4 801,375 + GFF1926 0.56 +0.7 801,384 + GFF1926 0.58 -0.2 801,384 + GFF1926 0.58 +0.6 801,384 + GFF1926 0.58 -0.1 801,385 - GFF1926 0.58 -0.4 801,385 - GFF1926 0.58 -0.7 801,385 - GFF1926 0.58 -0.3 801,542 + +0.5 801,542 + +0.1 801,542 + +1.1 801,542 + +1.0 801,542 + +0.7 801,543 - +0.0 801,543 - -0.4 801,543 - +0.4 801,565 - -0.1 801,672 - -0.1 801,672 - -0.0 801,692 + +0.3
Or see this region's nucleotide sequence